Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0256 ATGGGTATCTGCTGCGCGAAGCCGTCCACGGCGGAGGAAGCGGGGAACAAGAAGGGCAAAAAGGGGAAAAAAGAGAACCCCTTCGCTATCGATTACGGGTTTAACAACAGCGCCAACGCCAACGGCTCCAAGCTCACCGTTTTGAAGTCTCCCACGGGCCGCGAGATCGAGGCCCGCTACTTGCTGGGCCGCGAGCTGGGCCGGGGCGAGTTCGGCGTCACGTACCTCTGCACGGACAAAGAGAGCGGCGAGGAGCTTGCCTGCAAGTCCATTTCGAAGAAGAAGTTGAGGACCGCCATCGACATCGAGGATGTGAGGAGGGAGGTTGAGATCATGCGCCACTTGCCGCAGCATCCCAATATCGTCACCTTGAAGGACACCTATGAGGACGACAATGCCGTTCATCTCGTTATGGAGCTTTGCGAAGGCGGAGAGCTCTTCGATCGCATCGTTGCGCGTGGCCACTACACCGAACGCGCCGCCGCCGCTGTCACCAAAACTATCGTCGAAGTCGTTCAGATGTGCCACAAGCATGGCGTGATGCATCGGGATCTTAAGCCGGAAAACTTTCTATTTGCAAATAAGAAGGAAACCGCAGCTCTGAAGACTATAGATTTTGGGTTGTCAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGCGCAATTACGGACCAGAAGTAGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCACCATTTTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGACCCATGGCCTAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGATCCAAGGCGGCGGCTAACTGCACAGGAAGTGTTAGATCATCCGTGGTTACAAAATGCGAAGAAAGCTCCTAATGTTTCTTTAGGCGAAACAGTCAGGGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGGGCTTTAAGGGTGATCGCAGAGCATTTGACAGTAGAAGAAGCTGCTGGGCTAAAAGAGGGATTCCAGCGAATGGATATAAACAACAGAGGCAAAATTAACATTGATGAACTACGAGTAGGGTTGCATAAATTAGGCCATCAAGTTCCTGATTCAGATGTCCAAATTCTTATGGAAGCTGGTGATGTAGACAGGGACGGACACCTAGATTATGGAGAATTTGTAGCTATCTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCATCTTCGAAAAGCCTTCCAATTTTTTGATGAAAACCAAAGTGGGTATATTGAGATTGAAGAACTGCGTAACGCGTTATCTGATGATGTTGAAACAAACAGTGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGAATAAGTTACGATGAATTTGCTACAATGATGAAGGCTGGGACAGATTGGAGAAAAGCATCAAGACAGTACTCGCGAGAGAGGTTTGCGAGTCTGAGTCTGACTTTGATGAGAGACGGGTCATTGCATTTAAACAATGAAAAAACGGAGGGTAGATGA 1620 0.4704 MGICCAKPSTAEEAGNKKGKKGKKENPFAIDYGFNNSANANGSKLTVLKSPTGREIEARYLLGRELGRGEFGVTYLCTDKESGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPQHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKTIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQRMDINNRGKINIDELRVGLHKLGHQVPDSDVQILMEAGDVDRDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDENQSGYIEIEELRNALSDDVETNSEEVINAIMHDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKTEGR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0256 539 Gene3D Phosphorylase Kinase; domain 1 61 145 - -
Vra3g0256 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vra3g0256 539 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Vra3g0256 539 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Vra3g0256 539 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Vra3g0256 539 Pfam EF-hand domain pair 379 427 IPR002048 GO:0005509
Vra3g0256 539 Gene3D - 327 501 - -
Vra3g0256 539 SMART efh_1 437 465 IPR002048 GO:0005509
Vra3g0256 539 SMART efh_1 401 429 IPR002048 GO:0005509
Vra3g0256 539 SMART efh_1 473 501 IPR002048 GO:0005509
Vra3g0256 539 SMART efh_1 365 393 IPR002048 GO:0005509
Vra3g0256 539 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 17 515 - -
Vra3g0256 539 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Vra3g0256 539 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vra3g0256 539 Pfam Protein kinase domain 62 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0256 539 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0256 539 SUPERFAMILY Protein kinase-like (PK-like) 59 327 IPR011009 -
Vra3g0256 539 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0256 539 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Vra3g0256 539 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Vra3g0256 539 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Vra3g0256 539 CDD STKc_CAMK 59 317 - -
Vra3g0256 539 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Vra3g0256 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 515 - -
Vra3g0256 539 SUPERFAMILY EF-hand 347 524 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0256 Vra-Chr3 2909446 2913754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0256 1 534 EF-hand Containing Proteins AT5G19450 78.131 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra3g0256 Pkinase 2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0256 K13412 - gmx:100790745 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0256 3 2909446 2913754 Vra3g0256 3 2909446 2913754 ECH
Vra3g0256 3 2909446 2913754 Vra8g0299 8 3825618 3830241 PCT