Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0254 ATGGCTGAATCATTTCTCTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTACAAGAAGCTTCTCGAGTGGTGGGTGTATACGATGATCTTCGAGACCTTACAAAGACTCTCTCTTCGGTCAAGGCTGTGTTGTTAGATGCTGACCAAAAGCAAGACCACAACCATCAACTCCGTGAATGGCTCACTCAACTTAAAATTGTCTTCTCCGAAGCAGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCCACCTCTAATTCACTTCTTTTTCGCTACAAGATGGCACAACAAATTAAATATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGTATAAGTTTAGTCTTCAAATAATTGACGTTGACACACGTGTTGTTCATCAGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTAATAGGAAGGAAAAACGACAAAGAAAAGATCATAAAACTTTTGATGCAGCAGACTCCTAATGATGATGATACAAGTCTATCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAATGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGGCATTAAACAACTTGTTATCAAAATCATCAATTCTGCCAATGATGCAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGACTTGGAGCAACTGCAAAACCAATTGAAAAGCAAACTTTCCGGTAAAAAATTTCTTCTTGTTTTGGATGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTGGGTGCAGCAGGAAGTAAAGTTGTAGTGACCACACGCAGTCATTCAATTGCTTTCATGATGGGTACAGTTCCCTCTCACATTTTAGAANGTCTTTNGGAAGAGGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAAAGGGGTTCCACTGGCAGTGAGAACGATAGGTAGTTTACTATTCTCGAAATTTGAGGCTAGTGAATGGGAATATGTGAGTCGTAATGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCATGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTTTGTATTAAGTAGTTATAAAATGACTGCGCTTTGGGGGGCACATGGGCTCATTACACTACAAAAAACGAATAGAGCACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAGGATTTTCAAAACTTTGGCACTTCTTACAATTTTAGAATACATGATTTGGTGCATGATCTAGCTCTTTTTGTTGCAAAGGATGAGTGTCTATATGTAAGTTCCAACATTCAAAATATTCCAGAAAATGTTCGGCATCTGTCTTTTGCTGAAAGCAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACAGTTTCCAAATGGAGCAGTAGGTGTCAACGGTGAAGCTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACGTGGTTCGGCATTCGAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATTAGCAATAATCGCAAGATTAAGAGACTCCCCGATTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTTAATTAACGGATGCATGGAGCTGGAAGTATTGCCCAAAGGAATAAGAAAATTAATCAGTATTCATTATTTGATGTTTAGTACAAAGCAAACTGTTTTGCCTGTAAATGAGATCGCCAAATTGGTGTCGCTGGAATACTTGGTTATTGAATCATGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAATCATTGCGCATTCTGGACTGTGGGAGTCTAAAGTCAATCTCGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGGTTGTTGCAGACTGCAGTAATTTGGATTTGGAACTGTGGAAGGGCGATCGTGAAGAAGAAAGCCCGAAGCTGAAGTTAAAACTTGTATTTTTGATCGGTTTACCACAGTTGGTGACATTGCCTAAATGGGTTCAGGAAGCTGCCAACTCCTTAGGGTGTTTGGTTGTTTTTAATTGTGAGAATATTGAAACACTTCCAGATTGGTTACCAACTCTGACTAATCTGAAATCACTTCATCTACTAGATTGCCCAAATTTGGTATCTATCTCAGATAACATTCATCACCTCACTGCACTTGAAACTTTGAAAATTGGAGGTTGTGCTAACTTATATAAAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAGACATTGTGATTGAGGAACCAGAAGAACCTGAATAA 2592 0.3916 MAESFLFSIAESLIAKLASHALQEASRVVGVYDDLRDLTKTLSSVKAVLLDADQKQDHNHQLREWLTQLKIVFSEAEDVLDEFECQTLQNKVVKAHGSTKDKVSHFFSTSNSLLFRYKMAQQIKYINNRLDKVAADRYKFSLQIIDVDTRVVHQRDMTHSRVSDSDVIGRKNDKEKIIKLLMQQTPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFGIKQLVIKIINSANDADVPPHQQNLNMLDLEQLQNQLKSKLSGKKFLLVLDDVWNEDRVKWVELRNLIQVGAAGSKVVVTTRSHSIAFMMGTVPSHILEXLXEEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCKGVPLAVRTIGSLLFSKFEASEWEYVSRNEIWNLPQKKDDILPALKLSYDLMPSYLRQCFALFSLYPKDFVLSSYKMTALWGAHGLITLQKTNRALEDVANQYLHELLSRSFLQDFQNFGTSYNFRIHDLVHDLALFVAKDECLYVSSNIQNIPENVRHLSFAESSLFDNLVIKKSAAVRTVQFPNGAVGVNGEAILNTCLSKFKCLRVLDLRGSAFETLPRAIAKMKHLRYLDISNNRKIKRLPDSICKLQSLQVLLINGCMELEVLPKGIRKLISIHYLMFSTKQTVLPVNEIAKLVSLEYLVIESCHNVESIFGGVKFPSLKSLRILDCGSLKSISLDGQNFPELETLVVADCSNLDLELWKGDREEESPKLKLKLVFLIGLPQLVTLPKWVQEAANSLGCLVVFNCENIETLPDWLPTLTNLKSLHLLDCPNLVSISDNIHHLTALETLKIGGCANLYKKYEPNVGEFWPKISHIKDIVIEEPEEPE* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0254 863 Pfam Leucine rich repeat 579 634 IPR001611 GO:0005515
Vra3g0254 863 CDD RX-CC_like 2 134 IPR038005 -
Vra3g0254 863 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vra3g0254 863 Gene3D - 420 508 IPR036388 -
Vra3g0254 863 Gene3D - 10 124 - -
Vra3g0254 863 Gene3D - 149 329 IPR027417 -
Vra3g0254 863 Gene3D Ribonuclease Inhibitor 747 844 IPR032675 -
Vra3g0254 863 Gene3D Ribonuclease Inhibitor 512 692 IPR032675 -
Vra3g0254 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 434 IPR027417 -
Vra3g0254 863 PANTHER DISEASE RESISTANCE PROTEIN RP 6 747 IPR044974 GO:0006952
Vra3g0254 863 PRINTS Disease resistance protein signature 195 210 - -
Vra3g0254 863 PRINTS Disease resistance protein signature 275 289 - -
Vra3g0254 863 PRINTS Disease resistance protein signature 372 386 - -
Vra3g0254 863 PRINTS Disease resistance protein signature 597 613 - -
Vra3g0254 863 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 747 - -
Vra3g0254 863 Gene3D - 335 419 IPR042197 -
Vra3g0254 863 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vra3g0254 863 SUPERFAMILY L domain-like 498 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0254 Vra-Chr3 2872105 2875050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0254 579 683 WRKY Transcription Factor Family AT4G12020 31.132 1.03e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0254 - - gmx:100777049 1238.79