Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0250 ATGGCCGAATTATTTCTCTTCAGCATTGCAGAGTCACTCATAACAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTGGTGGGTTTATACGACGATCTTCGAGACCTTGGAAAGACTCTCTCTTTCATCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCACCTTAAAACTGTCTTCTCCGAAGCCGAAGATCTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAACACCAAAGATAAGGTAAGTCGCTTCTTCTCCAATTCTAATCCACTTCTTTTTCGCTACAAGATGACACAACAAATTAAATATATCAACAACAGACTAGACAAGGTTGCAGCGCATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTTATCGGAGAGATATGACACACTCCCGTGTCAGTGATTTAGATGTGATAGGAAGAAAAAACGACAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATTTGTTATCCCCATTGTAGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAAGAATGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAATTGATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTTCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAACAACTGCAAAAGCAATTGAAAAGAAAACTTTTCGGTCAAAAGTTCTTACTCGTATTGGACGATGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAGTTGTAGTGACTACACGTAGTCATTCAATTGCTTCCATGATGGGCACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAACATGATTCTTTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCCAAATTTGAGGACAGTGAATGGGAATATGTGAGGGACAGTGAAATCTGGAATTTGCCTCAAAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTACTTGAAGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCCCTAGTTTTGAAATAGCTGCGATTTGGGGATCACTTGGACTCATTGCACTACCAAAAACAAATAGGACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTTGGCAATAAGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGACCGATGAGTGTCTGCATGTGAGTTTCAAAATTCAAAATATTCCAGATAATGTTCGACATCTGTCTTTTACTGAAAGCAGTTTGTTCGGAAATTTAGTAACCAAAAAATCAACAGTTGTGAGATCCGTACTGTTTCCAAACGGTGCAGCAGCTGCCATCGATGAAGCTTTACTAAATATGTTCCTGTCAAAGTTCAAATACTTGCGAGTTTTGGATTTACGTGGTTCGACATGCAAGACTTTGCCCCGTGCCATTACTAAGATGAAACATTTGAGATATTTGGACATTAGCGAAAATCTCAACATTAAGAGACTCCCGGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCACTTAAGACATGCAAGAAGCTGGAAATATTGCCCAAAGGATTAAGAAAACTAATCAGTCTCCGTTCTTTGGAGTTTAGCACAAAGCAAACTATTTTGCCTGTGAATGAGATCGCCCAATTGGGGTCGCTTGAATACTTGTACATTGAATCGTGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAGAGACTAAAGTCATTGTCTCTGGATGGTCAAAATTTTCCCGAATTAGAAACATTGCTTGTTAAGGACTGCGGTAATTTGGACTTGGAACTGTGTAAGGGCCACCATGAAGAAGAAAGCCCTAAGCTGAAGCTAAAACTTGTATTATTTTTCGGTTTATCACAGATGGTGGCCTTGCCTAACTGGCTTCAGGAAGCTGTCAAATCCTTGCAGCGCTTGTATGTTTTAAATTGTGACAATATTGAAACACTTCCGGATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGGTTTAATAAATTGTCCAAATCTGGTATCTCTGGCAGATAACATTCATCACCATACTGCACTTGAAAGTTTGAGGATTGAAGGTTGTGCTAACTTACATAAAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAAAGATTGTGATCGTAGAACCAGAAGAACTTAAGAAGAATTAG 2598 0.3903 MAELFLFSIAESLITKLASHAFQEASRVVGLYDDLRDLGKTLSFIKAVLLDAQQKQDHNHQLREWLTHLKTVFSEAEDLLDEFECQTLQNKVVKAHGNTKDKVSRFFSNSNPLLFRYKMTQQIKYINNRLDKVAAHRHKFSLQIIDVDTRVVYRRDMTHSRVSDLDVIGRKNDKEKIIELLMQQNPNDDDTSLFVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVSPHQQNLNMLDLEQLQKQLKRKLFGQKFLLVLDDVWNEDRVKWVELRNLIQVSAAGSKVVVTTRSHSIASMMGTVPSHILEGLSEHDSLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWEYVRDSEIWNLPQKKDDILPALKLSYDLLPSYLKQCFALFSLYPKDYLFPSFEIAAIWGSLGLIALPKTNRTLEDVANQYLHELLSRSFLQDFENFGNKFRFRIHDLVHDLALFVATDECLHVSFKIQNIPDNVRHLSFTESSLFGNLVTKKSTVVRSVLFPNGAAAAIDEALLNMFLSKFKYLRVLDLRGSTCKTLPRAITKMKHLRYLDISENLNIKRLPDSICKLQSLQVLSLKTCKKLEILPKGLRKLISLRSLEFSTKQTILPVNEIAQLGSLEYLYIESCHNVESIFGGVKFPSLKTLCVGDCQRLKSLSLDGQNFPELETLLVKDCGNLDLELCKGHHEEESPKLKLKLVLFFGLSQMVALPNWLQEAVKSLQRLYVLNCDNIETLPDWLTTLTDLKALGLINCPNLVSLADNIHHHTALESLRIEGCANLHKKYEPNVGEFWPKISHIKKIVIVEPEELKKN* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0250 865 Pfam Leucine rich repeat 579 632 IPR001611 GO:0005515
Vra3g0250 865 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vra3g0250 865 CDD RX-CC_like 8 134 IPR038005 -
Vra3g0250 865 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vra3g0250 865 Gene3D - 420 508 IPR036388 -
Vra3g0250 865 SUPERFAMILY L domain-like 498 833 - -
Vra3g0250 865 PRINTS Disease resistance protein signature 195 210 - -
Vra3g0250 865 PRINTS Disease resistance protein signature 275 289 - -
Vra3g0250 865 PRINTS Disease resistance protein signature 372 386 - -
Vra3g0250 865 PRINTS Disease resistance protein signature 621 637 - -
Vra3g0250 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 434 IPR027417 -
Vra3g0250 865 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 782 - -
Vra3g0250 865 Gene3D - 335 419 IPR042197 -
Vra3g0250 865 Gene3D Ribonuclease Inhibitor 747 844 IPR032675 -
Vra3g0250 865 Gene3D Ribonuclease Inhibitor 562 746 IPR032675 -
Vra3g0250 865 PANTHER DISEASE RESISTANCE PROTEIN RP 6 782 IPR044974 GO:0006952
Vra3g0250 865 Gene3D - 10 124 - -
Vra3g0250 865 Gene3D - 151 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0250 Vra-Chr3 2851487 2855286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0250 178 812 WRKY Transcription Factor Family AT5G45050 21.912 2.07e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0250 - - gmx:100777049 1204.89