Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0245 ATGGATACTTGCAAGAAGTCACCCCTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGAGGTCCACAAAATGCCTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCGAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAGCCCAGGTCCACTTCACTTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCGATGTTCCCTTCCTGTGGATTACTCAATGTAAGTGCTCAACCCAGTGTTCATTTTATCCATCAGAGGCTACAAGAGCTAAAGCAGAATTCAGTAGAGAGGCAATCCCCAAATAGTTCATCCAATGATCCGGTGGCAGAAATTCAGAATGTAGTAGACAACACTAATCATGCAGAAAGTCCTCCAAAAGACTCTCAAACATCATCAGAGGAGGTTCCAGGAGATTTTCAAGAGAAACCCCAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGATGAAAAACAGTCAGCTGATAGCACAGAAAGTTCAACAGTTCCTGAAGCTGTGTTGAGATATGAAAATGATGAATTGGGAGTGTTTTCTGACTCGAGTGTTAACTGGGAGGCTTTGATTGAGATGCATGGAATTGCTGGTATTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCACAAATGATGACCTTACTTTCTCAACTTCCATCTGGAACTTCTAA 837 0.4456 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSLTPGKFKWFPSKNFISMFPSCGLLNVSAQPSVHFIHQRLQELKQNSVERQSPNSSSNDPVAEIQNVVDNTNHAESPPKDSQTSSEEVPGDFQEKPQIDLHEFLQQLGILKDEKQSADSTESSTVPEAVLRYENDELGVFSDSSVNWEALIEMHGIAGIQELESTQLEAYGTNDDLTFSTSIWNF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0245 278 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 275 - -
Vra3g0245 278 MobiDBLite consensus disorder prediction 164 185 - -
Vra3g0245 278 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vra3g0245 278 MobiDBLite consensus disorder prediction 164 183 - -
Vra3g0245 278 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g0245 278 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vra3g0245 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 275 - -
Vra3g0245 278 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0245 Vra-Chr3 2787591 2789280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0245 5 278 AP2-EREBP Transcription Factor Family AT3G57600 53.546 3.93e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0245 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0245 - - var:108328773 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0245 3 2787591 2789280 Vra3g0245 3 2787591 2789280 ECH
Vra3g0245 3 2787591 2789280 Vra8g0274 8 3545858 3547553 PCT