Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0244 ATGGCAACTGCGGGAAGTAAGAAGCCTTTATCATTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATTGCTACCGGCGCCTCCAGGAATTTGGACACCGCTCAAAAGAGGGGTTCCACAATCCTTAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACATAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGACTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTATAGATTAAAGGACTCGTCAATAACGGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGACGCATTGATACAGTTGAGTAAAGGAGTGCACAGGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCAACCTGCAGTGTCCAAGAAGGATATATCCTTTACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTTGAAAGCTCTGTCGTCAAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCAAATATTGCTGTTGACAACATTGTAGAGCGGCTCGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAACTTCTGAAAACCAAAGACAGAAATACAAGAAAGGACATACAGAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTCGCAGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCCAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCACCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACTCTCTTTGAACGACTTGCAGAAACGTATGGAGATGAAATCACATCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATGCAAGTGTTAGTGCACATATGTTATATGATCTTGACGGTGTGAAGCGGACATCTTCAACTGAACCGACACTTCTTCTTGTAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAAGTTACTGTGGCTCATGCGAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATAGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATATTGAAAAACAAGGAGGACCGGTTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAAGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGTATATCTTTCAGGTCGGCTTTCTAAGTGATCGCCGGCGAATGAATGTAGCCGTGACGCGGTCTAGAAGGCAGTGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1947 0.4268 MATAGSKKPLSLQQFISVTAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPVLFGERQPAVSKKDISFTPYNRNLDQSQKEAVLKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAETYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHASVSAHMLYDLDGVKRTSSTEPTLLLVDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKILKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEYIFQVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0244 648 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 646 - -
Vra3g0244 648 Gene3D - 440 648 IPR027417 -
Vra3g0244 648 Coils Coil 295 315 - -
Vra3g0244 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 634 IPR027417 -
Vra3g0244 648 Pfam AAA domain 417 617 IPR041679 -
Vra3g0244 648 CDD DEXXQc_SMUBP2 193 441 - -
Vra3g0244 648 TIGRFAM TIGR00376: putative DNA helicase 341 641 IPR004483 GO:0003677|GO:0005524
Vra3g0244 648 Pfam AAA domain 194 408 IPR041677 GO:0004386
Vra3g0244 648 CDD SF1_C_Upf1 442 634 IPR041679 -
Vra3g0244 648 Gene3D - 38 140 - -
Vra3g0244 648 Gene3D - 20 424 IPR027417 -
Vra3g0244 648 SMART ultradead3 190 441 IPR014001 -
Vra3g0244 648 SMART AAA_5 208 460 IPR003593 -
Vra3g0244 648 PANTHER HELICASE WITH ZINC FINGER 2 10 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0244 Vra-Chr3 2778500 2785609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0244 167 377 Core DNA Replication Machinery Family AT1G08840 27.014 2.39e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0244 K19036 - gmx:100801854 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0244 3 2778500 2785609 Vra3g0244 3 2778500 2785609 ECH