Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra3g0239 | ATGGCTGACCCTTACTCCAATTTTTTCTCATCCTCTTCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACAACCGACACCACTTTTTTCCACTACCACCACCACCACAACCATACTTCTTCCACAACTGCAACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTGCCCCTCTTGAGACTCAGTCCGGCCAAGCAAGAGGAGGAGGAGGAGGACCTGTCTTGCACTGGACCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCGAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCTCCAGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATCAAACCTTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCGGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGACTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAACAAGATAATGATGATTCCACACAGTGA | 1050 | 0.4819 | MADPYSNFFSSSSFFRFNHHFPSSNPSPHAPYVHHNFINHSKTTDTTFFHYHHHHNHTSSTTATFSSFPPSPPLREELPLLRLSPAKQEEEEEDLSCTGPMDVEERMHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ* | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra3g0239 | 349 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 189 | 209 | IPR013087 | - | |
Vra3g0239 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 187 | 214 | IPR013087 | - | |
Vra3g0239 | 349 | SMART | c2h2final6 | 271 | 291 | IPR013087 | - | |
Vra3g0239 | 349 | SMART | c2h2final6 | 187 | 209 | IPR013087 | - | |
Vra3g0239 | 349 | Gene3D | Classic Zinc Finger | 186 | 209 | - | - | |
Vra3g0239 | 349 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 348 | IPR043584 | GO:0003700|GO:0010468 | |
Vra3g0239 | 349 | MobiDBLite | consensus disorder prediction | 135 | 162 | - | - | |
Vra3g0239 | 349 | SUPERFAMILY | beta-beta-alpha zinc fingers | 252 | 291 | IPR036236 | - | |
Vra3g0239 | 349 | Gene3D | Classic Zinc Finger | 249 | 324 | - | - | |
Vra3g0239 | 349 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 348 | - | - | |
Vra3g0239 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 271 | 291 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra3g0239 | Vra-Chr3 | 2724405 | 2727154 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra3g0239 | 1 | 346 | C2H2 Transcription Factor Family | AT3G57670 | 61.140 | 2.40e-145 | 414 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra3g0239 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra3g0239 | - | - | gmx:100802907 | 565.459 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra3g0239 | 3 | 2724405 | 2727154 | Vra3g0239 | 3 | 2724405 | 2727154 | ECH | |
Vra3g0239 | 3 | 2724405 | 2727154 | Vra4g0188 | 4 | 4655793 | 4658025 | ECH | |
Vra3g0239 | 3 | 2724405 | 2727154 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra3g0239 | 3 | 2724405 | 2727154 | Vra8g0270 | 8 | 3466139 | 3469889 | PCT |