Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0239 ATGGCTGACCCTTACTCCAATTTTTTCTCATCCTCTTCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACAACCGACACCACTTTTTTCCACTACCACCACCACCACAACCATACTTCTTCCACAACTGCAACTTTTTCTTCTTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTGCCCCTCTTGAGACTCAGTCCGGCCAAGCAAGAGGAGGAGGAGGAGGACCTGTCTTGCACTGGACCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCGAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCTCCAGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATCAAACCTTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCGGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGACTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAACAAGATAATGATGATTCCACACAGTGA 1050 0.4819 MADPYSNFFSSSSFFRFNHHFPSSNPSPHAPYVHHNFINHSKTTDTTFFHYHHHHNHTSSTTATFSSFPPSPPLREELPLLRLSPAKQEEEEEDLSCTGPMDVEERMHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0239 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Vra3g0239 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Vra3g0239 349 SMART c2h2final6 271 291 IPR013087 -
Vra3g0239 349 SMART c2h2final6 187 209 IPR013087 -
Vra3g0239 349 Gene3D Classic Zinc Finger 186 209 - -
Vra3g0239 349 PANTHER ZINC FINGER PROTEIN WIP2 1 348 IPR043584 GO:0003700|GO:0010468
Vra3g0239 349 MobiDBLite consensus disorder prediction 135 162 - -
Vra3g0239 349 SUPERFAMILY beta-beta-alpha zinc fingers 252 291 IPR036236 -
Vra3g0239 349 Gene3D Classic Zinc Finger 249 324 - -
Vra3g0239 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 348 - -
Vra3g0239 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0239 Vra-Chr3 2724405 2727154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0239 1 346 C2H2 Transcription Factor Family AT3G57670 61.140 2.40e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0239 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0239 - - gmx:100802907 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0239 3 2724405 2727154 Vra3g0239 3 2724405 2727154 ECH
Vra3g0239 3 2724405 2727154 Vra4g0188 4 4655793 4658025 ECH
Vra3g0239 3 2724405 2727154 Vra2g0536 2 4240345 4243043 ECH
Vra3g0239 3 2724405 2727154 Vra8g0270 8 3466139 3469889 PCT