Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0238 ATGGAGACAGAGAACGGGGACACCAAGTCCAGAAAGATGGAAGACTATGAAGTCATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCATTATAACAGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCAGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTTGACTACTTGCACTCTAATCGTGTAATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACTAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGCTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCTGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTCGAAAAAATCCAGAACATAGGCCAACCGCGGCTGAATTGTTAAGGCATCCACTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCAAATGATGCTGTTACCATCTCAACCAGTGCAGAAGACAATATTGAGACCAGGATGGTTGATCTTACCAGCTACATAGTAGAATCTTCTACTAGTATTAGCGGCTCAAAAGATGGGTCAACAACCTCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAGGTAGACCTGCAAGGGAAACGAATGACAACGAAATCTGTTTAAAGAATTCACAAGAATCACTGCATGAGGAACAGATATTTGCTGCTAAACATTTTCATAAATTAGAAGATGGCATTAAAGCAGTGACCCCAGAAGTTGAAGACGGTTCTTGCAATGAAGGTTTGGACAATGCTGAAGCACCAAGGGAAGATTCGAGCCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGAAGTAGCAGCACTGATAAAGATAAGTCCATCAACGAGGAAAAGCCATCACTAACTGTGAATCCTATTACAGTCGAACATGATACCGAATCTAGAAACCACTTGAATGTATTTACAGAAGGCTCACATATGAACGGCTTGACATCTGATTGTAATGATGCACTTCTAGTTAAGGATGATGACACAGCTAACAGACCCATTCCCTCCACGCATAAAGATGATAAAATGGTGGAGGGTGATCAGACAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTGGTCGGTGACGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATTTCTGCCCAAAAATTTAATCCTCAGACCTAG 1914 0.4154 METENGDTKSRKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKGRPARETNDNEICLKNSQESLHEEQIFAAKHFHKLEDGIKAVTPEVEDGSCNEGLDNAEAPREDSSLDISGKSTMSSAGSSSTDKDKSINEEKPSLTVNPITVEHDTESRNHLNVFTEGSHMNGLTSDCNDALLVKDDDTANRPIPSTHKDDKMVEGDQTSGVSLSVITEVVGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPQT* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0238 637 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Vra3g0238 637 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0238 637 Gene3D Transferase(Phosphotransferase) domain 1 98 324 - -
Vra3g0238 637 MobiDBLite consensus disorder prediction 437 493 - -
Vra3g0238 637 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vra3g0238 637 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0238 637 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vra3g0238 637 MobiDBLite consensus disorder prediction 295 315 - -
Vra3g0238 637 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0238 637 MobiDBLite consensus disorder prediction 460 477 - -
Vra3g0238 637 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 493 620 - -
Vra3g0238 637 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 484 - -
Vra3g0238 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vra3g0238 637 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 484 - -
Vra3g0238 637 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 493 620 - -
Vra3g0238 637 CDD STKc_Nek 15 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0238 Vra-Chr3 2682307 2688694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0238 9 271 MAP Kinase Kinase Kinase AT3G13530 32.830 8.34e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra3g0238 Pkinase 6.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0238 K08857 - gmx:100793379 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0238 3 2682307 2688694 Vra3g0238 3 2682307 2688694 ECH
Vra3g0238 3 2682307 2688694 Vra8g0268 8 3432170 3440449 PCT