Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0237 ATGGCGAAGAAGAAAGTTAGGGTTTCTGACGACGAGGAAATGAAAGGGCAGGGAGATGAAACCAGCCTATACCAGGTTCTTGGCGTGGAGAGAACTGCTTCTCAGCAGGAAATAAAGAAGGCTTACTACAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTCCAGCAACTGCAAAAGGTGATATCGATTCTTGGGGATGAAGAGAAGAGGACACTATATGATCAGACTGGATGTGTTGACGATGATGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTAAGGAGTTCGAAACAAACTATAAGGGATCTGACTCGGAAAAAAATGATTTGATGGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTGCTGGAGAATTGAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGGAGTATCTGAAACCAAACCGCCTCCAAATCCTTTGAGGAGGGAAAAGTCTAATAAGCAGTCAGAAACAGATCTGTATGCAATGATAGCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGCGAAAGCTAGAGACTGGTAGATCCTCTAAAAAGTCAAAACAATCCAAGCGAAATTAA 828 0.4227 MAKKKVRVSDDEEMKGQGDETSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRTLYDQTGCVDDDDLAGDVVQNLQEFFRTMYKKVTEADIKEFETNYKGSDSEKNDLMDLYKKCKGNMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKATKAYQKWAKGVSETKPPPNPLRREKSNKQSETDLYAMIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKKSKQSKRN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0237 275 SMART dnaj_3 21 79 IPR001623 -
Vra3g0237 275 Pfam DnaJ domain 23 84 IPR001623 -
Vra3g0237 275 MobiDBLite consensus disorder prediction 250 268 - -
Vra3g0237 275 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Vra3g0237 275 SUPERFAMILY Chaperone J-domain 20 94 IPR036869 -
Vra3g0237 275 PRINTS DnaJ domain signature 24 42 IPR001623 -
Vra3g0237 275 PRINTS DnaJ domain signature 42 57 IPR001623 -
Vra3g0237 275 PRINTS DnaJ domain signature 59 79 IPR001623 -
Vra3g0237 275 PRINTS DnaJ domain signature 79 98 IPR001623 -
Vra3g0237 275 MobiDBLite consensus disorder prediction 237 275 - -
Vra3g0237 275 Gene3D DnaJ domain 7 101 IPR036869 -
Vra3g0237 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 271 IPR042977 -
Vra3g0237 275 CDD DnaJ 24 76 IPR001623 -
Vra3g0237 275 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 271 - -
Vra3g0237 275 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0237 Vra-Chr3 2677112 2679674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0237 24 84 C2H2 Transcription Factor Family AT1G74250 37.879 1.13e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0237 K09529 - gmx:100793909 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0237 3 2677112 2679674 Vra8g0267 8 3411148 3413828 PCT