Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0236 ATGGCCACTACTACATTCTGTACATACCTATTCCTTCTCTCTGTGTCCCTTTCAATCTTCAATCTTTGTTCATCTTCATCAGAGAAGGACACCCTTCTCTCCTTCAAGACCTCCATAGAAGACTCTAAGAAAGCCTTGTCCAGCTGGTCCAACACTTCATCAAACCATTACTGTAACTGGACTGGAATAACCTGTTCCAACACACCTTTACTTTCTGTAATTTCTATCAACCTTCAGAGCTTAAACCTTTCTGGGGATATCTCATCTACCATTTGTGACCTTCCAAATCTGTCTTATCTCAACCTTGCTGATAACATCTTCAACCAGCCCATCCCTCTTCACCTCTCTCAGTGTGGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGATTTGGGAAGAAACCACATAGAAGGAAAAATCCCTGAGAGCTTAGGCTCCTTGAAGAATCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCTGGTAGTGTGCCTGCTGTCTTTGGCAATCTAAGTAAACTTGAAGTTCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATCGGCGAGCTTGAAAATCTAAAGCAGCTTCTGTTGCAAAGCTCTTCTTTTCAAGGCAAAATTCCAGATTCTCTTGTGGGCCTGGTTAGTTTGACCCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATGTTTCACAAAACAAGCTTTTGGGGCCATTTCCAAGTGGCATCTGCAAAGGAGAAGGCCTTATAAACCTCTGTCTCCACTCAAATTCCTTCAATGGTTCAATACCCAACTCCATCGATGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCTGGAGATTTCCCCGCTGCCTTGTGGTCATTACCCAAAATCAAGCTCATTAGAGTTGAAAATAACAGATTCTCAGGCCAAATACCCGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTCGACAACAACAGCTTTGCTGGTAAAATTCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCGTTTCGATGGTGAACTTCCTCCTAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATACCAGCGCTAAAAAAATGCAGGAAACTAGTTTCACTGTCTTTGGCAGATAACAGTCTATCTGGAGAAATCCCCTCTTCTCTTGCCGAGCTACCTGTACTCACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTCTCCTTCAATCAGTTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGACGGAAACCCTGGTCTTTGTGGCCCTGGGTTGCCTAACTCTTGTTCTGATGACATGCCAAGACGCCACATTGGTAGCATTACTACCTTAGTATGTGCCCTCATCAGTTTAGCCTTTGTTGCTGGAACTGCCATTGTTGTTGGTGGGTTTATTTTGTATAGGAGGTATTCCAAGGGGAATCAAGTGGGGGTCTGGCGCTCAGTGTTCTTCTATCCTCTCAGGATTACCGAGCATGATCTACTTGTAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGGTTTTTTGGTAGAGTTTATGTTGTGAGTTTACCTAGTGGTGAACTAGTAGCTGTGAAGAAGTTAGTCAATTTTGGAAACCAGTCCTCCAAAAGTTTGAAAGCGGAGGTGAAGACTCTGGCTAAAATTAGGCACAAGAATGTTGTTAAAATTCTGGGGTTCTGCCACTCCGATGAGTCAGTGTTTCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGAATTTTGAGCTGCAGTGGGTGGTTCGATTAAAAATTGCCATTGGAGTTGCTCAAGGGCTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAACTTCGAGCCAAAGCTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAAGCTTCATTTCAATCAATTTTGAACTCTGAAGCAGCACCTTCATGTTACATCGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGCGTGGTACTACTGGAGCTAGTGAGTGGTAGGCAAGCAGAAGCAACGGAGTCAACTGAAGTTGACATTGTGAAGTGGGTTAGGAGGAAAGTGAACATCGCTAATGGGGTGCATCAAGTTCTTGACCCAAAAATATCAAACACTTTTCACCAAGAGATGATTGGAGCTTTAGATATTGCACTTCATTGCACTTCTGTAGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAAGCCTTCAATCCCTGGAGTCAAGAAGTTGCATTGCAAATTTGCATGAAGCAAATGAGGAACCCTCACCAGTCTGA 2649 0.4319 MATTTFCTYLFLLSVSLSIFNLCSSSSEKDTLLSFKTSIEDSKKALSSWSNTSSNHYCNWTGITCSNTPLLSVISINLQSLNLSGDISSTICDLPNLSYLNLADNIFNQPIPLHLSQCGSLETLNLSTNLIWGTIPSQISQFASLRVLDLGRNHIEGKIPESLGSLKNLQVLNMGSNLLSGSVPAVFGNLSKLEVLDLSQNPYLVSEIPEDIGELENLKQLLLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSQNKLLGPFPSGICKGEGLINLCLHSNSFNGSIPNSIDECKSLERFQVQNNAFSGDFPAALWSLPKIKLIRVENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPQGLGLVKSLYRFSASLNRFDGELPPNFCDSPVMSIVNLSHNSLSGQIPALKKCRKLVSLSLADNSLSGEIPSSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLDGNPGLCGPGLPNSCSDDMPRRHIGSITTLVCALISLAFVAGTAIVVGGFILYRRYSKGNQVGVWRSVFFYPLRITEHDLLVGMNEKSSMGNGGFFGRVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQNFELQWVVRLKIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEASFQSILNSEAAPSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEATESTEVDIVKWVRRKVNIANGVHQVLDPKISNTFHQEMIGALDIALHCTSVVPEKRPSMVEVVRSLQSLESRSCIANLHEANEEPSPV* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0236 882 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Vra3g0236 882 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Vra3g0236 882 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Vra3g0236 882 Pfam Protein kinase domain 594 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0236 882 Pfam Leucine Rich Repeat 458 479 IPR001611 GO:0005515
Vra3g0236 882 SMART LRR_typ_2 190 215 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 166 189 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 264 288 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 94 118 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 455 478 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 239 262 IPR003591 -
Vra3g0236 882 SMART LRR_typ_2 142 165 IPR003591 -
Vra3g0236 882 Gene3D Ribonuclease Inhibitor 241 526 IPR032675 -
Vra3g0236 882 SUPERFAMILY Protein kinase-like (PK-like) 601 860 IPR011009 -
Vra3g0236 882 SUPERFAMILY L domain-like 206 519 - -
Vra3g0236 882 ProSiteProfiles Protein kinase domain profile. 593 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0236 882 Gene3D Ribonuclease Inhibitor 184 239 IPR032675 -
Vra3g0236 882 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vra3g0236 882 Gene3D Transferase(Phosphotransferase) domain 1 669 878 - -
Vra3g0236 882 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 871 - -
Vra3g0236 882 PANTHER OSJNBB0022F23.6 PROTEIN 8 871 - -
Vra3g0236 882 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Vra3g0236 882 SUPERFAMILY L domain-like 25 301 - -
Vra3g0236 882 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Vra3g0236 882 PRINTS Leucine-rich repeat signature 242 255 - -
Vra3g0236 882 PRINTS Leucine-rich repeat signature 264 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0236 Vra-Chr3 2664062 2667421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0236 28 863 Receptor kinase-like Gene Family AT5G06940 64.608 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra3g0236 Pkinase 5.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0236 - - gmx:100794428 1546.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0236 3 2664062 2667421 Vra3g0236 3 2664062 2667421 ECH