Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0234 ATGGAAGAACCATACTCCATGCTCCAGAATTCAACAAATATGGAACCAACCATGTTAGCCACTCAAGAAGCCACGCCCAGGAATTGGAATCAAGACGCACTGCTACTCCATCAACACCTTCTCACTCCACAAATGGAAACCACTTCTCAAGGCTCAATCAACAATTCCACCTCCACTTCATCCCTTCAATACCATGTTTTATCCCTTTTAGACGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTGTCTTGCAATGTTGGGTCCATTGCTGCCACAGCAACAGCAACGATTATCAATGAAAGGGAACGAAACGATTGTGGAGAGAATGATCGAAGACAGCACGAGTCGTGTCTTGATTTGGTTGCTAAAACAATTGGTAGCAAGAGCTCTGTGTACCGAGGAGTAATCAAGTGCAACGATGATCGATTTGAAGCATTTGTGTGGGATAACAGCGATCCAGGGGAAAAAGGAAGAACAGTTTATATTGGTGCTTATTCAACTGAAGTTGACGCCGCCAAAGCTCATGATTTGGTGTCAATCAGAATAGGGGGTTTAAAAGCATTAACCAATTTTCATGTGAGATGTTATTCCAAAGACATGGATGAAATGAGAAGACTGAGCAAATGGGACTATATTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGACGGTGATTCCCCTTTCCGTGGCGTCTACAGGGTGCCGTCAAGCAGAAAATGGGAAGCAAGGCTCGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGAAAGCAATTACCAACTTTGACTGGAATTCCTATGAAACTGAGGGCATAATGGAGAGTGTGATTGCTCAAGCAACGGACGGATCGATCATTCTGCAGAAAGAAGAGAAAAACAAAGAAACAGAAGCATCTCCTCAAAACAGCTCCTCAGTTCAATGCCATCCTCTACCACCCAGCATCCCATCCATTTGTCGTTGCTGCCACAACCAAATTCTCACACCAACCAACCCTCACGCTCTTGGTAACATTGCTGATACTGCTGGAAACAATGCAAGTAACACTTCAATTGTTAACGATGCTGTACAGTTTCCAAACGAGAATGCAACACAGCAACAGCCACGGTCACTTCAGATTCCGAGGCAAATGAGTTTCAACGATGGCTCTAATCAGAACCTTGTCAACAACAACAACAATAATCAGCTTCCAAATCATAATGCAGCACAGCAACAGTCACTTCAAACTCCGAGGCAAGTGAGTTTTAACAATGCCTTTAATCTGAATAACTACAACAACAACAAGAACCAGTTTCTGCCTCAGGGTTCTAACCTTGCTTTGCCTGCTACTGGCATCCGAAATCTAGAGTTAGAAAAGTGCGTCCGTTTCCCTGATTGGAGATCAGGTTTCGGAAAGAAGTTACTTGGGGGGAACTTGGAATTGGAGCCTTTAAGCAACGCTGCTTCCCTCGGTCTGCAAGCTCTACCACAAGTCACGCTGAATGGAAGTACAGGAGCAACACAGCTACACGCACCTCCATTGCACCAAAGTTATGAGCATCAGAACTTGAACTCCTGCACCTCTGATAGTTTTCAGAATCCTGTTTCTGAACCAAACAACAACGGCTTCCAAAGTGAACTTGATGTGGACATGAGTGATTATCTCAACAGATCTTACATAGAAGACACTGATTTCACATGTGATTATGACATGTTTTCAGCCATGAATGGGGCTAGATAG 1806 0.4385 MEEPYSMLQNSTNMEPTMLATQEATPRNWNQDALLLHQHLLTPQMETTSQGSINNSTSTSSLQYHVLSLLDGIINEKHIEETLIQSKLLSCNVGSIAATATATIINERERNDCGENDRRQHESCLDLVAKTIGSKSSVYRGVIKCNDDRFEAFVWDNSDPGEKGRTVYIGAYSTEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRRLSKWDYICAVRGLGKGYTDGDSPFRGVYRVPSSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGKAITNFDWNSYETEGIMESVIAQATDGSIILQKEEKNKETEASPQNSSSVQCHPLPPSIPSICRCCHNQILTPTNPHALGNIADTAGNNASNTSIVNDAVQFPNENATQQQPRSLQIPRQMSFNDGSNQNLVNNNNNNQLPNHNAAQQQSLQTPRQVSFNNAFNLNNYNNNKNQFLPQGSNLALPATGIRNLELEKCVRFPDWRSGFGKKLLGGNLELEPLSNAASLGLQALPQVTLNGSTGATQLHAPPLHQSYEHQNLNSCTSDSFQNPVSEPNNNGFQSELDVDMSDYLNRSYIEDTDFTCDYDMFSAMNGAR* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0234 601 Pfam AP2 domain 236 284 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 Gene3D AP2/ERF domain 138 201 IPR036955 GO:0003700|GO:0006355
Vra3g0234 601 Gene3D AP2/ERF domain 235 293 IPR036955 GO:0003700|GO:0006355
Vra3g0234 601 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 43 446 - -
Vra3g0234 601 CDD AP2 236 294 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 CDD AP2 137 198 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 SUPERFAMILY DNA-binding domain 137 200 IPR016177 GO:0003677
Vra3g0234 601 SUPERFAMILY DNA-binding domain 235 293 IPR016177 GO:0003677
Vra3g0234 601 ProSiteProfiles AP2/ERF domain profile. 235 292 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 SMART rav1_2 138 205 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 SMART rav1_2 235 298 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 MobiDBLite consensus disorder prediction 405 437 - -
Vra3g0234 601 ProSiteProfiles AP2/ERF domain profile. 138 199 IPR001471 GO:0003700|GO:0006355
Vra3g0234 601 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0234 Vra-Chr3 2644257 2647868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0234 130 325 AP2-EREBP Transcription Factor Family AT1G51190 37.624 7.15e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra3g0234 AP2 6.9e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0234 - K09285 pvu:PHAVU_001G137500g 966.066