Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0231 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGAAGGCGCTACGCTTGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCACCGGCGCCGGAAAATGCCAGCTCATTCACTGCACTGCTTGAGCTTCCGCCGACCCAGGCAGTGGAGCTCCTTCACTCGCCCAACTCTGATGGAGCTCGGAAGCCGCCTACTTGCCACGTCAGCACTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCTTTAATTGAACGCGCAGCCAAGTTCTCCGTGTTTGCTGGTGAAAACTCAACGTCGCCGGGGGAGGCATGTCTGTTTCGGGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGTGTTTCGGATCCTGTTGTTGAGAACAAGAACGAGAAGACGACCGCGAAGAGAAAGGAGCGAGAGAAGAAAGTAACGGTTAGAGGATCGTTGAAGAAGAGTAAGAGCGTCGCTGATGAGACCTCCGTTGACAGTGAGAAGCTTCCCTATGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACAGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGATGGGGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCGGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAATTCGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCACAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1107 0.5032 MEQAPVGLRGSVHEGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPNSDGARKPPTCHVSTNHKPYLLNSFGGNLTFPSNAALIERAAKFSVFAGENSTSPGEACLFRAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPVVENKNEKTTAKRKEREKKVTVRGSLKKSKSVADETSVDSEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0231 368 Coils Coil 248 268 - -
Vra3g0231 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 368 IPR024097 GO:0006355
Vra3g0231 368 MobiDBLite consensus disorder prediction 159 189 - -
Vra3g0231 368 MobiDBLite consensus disorder prediction 139 158 - -
Vra3g0231 368 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 368 - -
Vra3g0231 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Vra3g0231 368 SMART finulus 214 264 IPR011598 GO:0046983
Vra3g0231 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Vra3g0231 368 CDD bHLH_AtBPE_like 198 283 - -
Vra3g0231 368 Gene3D - 205 277 IPR036638 GO:0046983
Vra3g0231 368 MobiDBLite consensus disorder prediction 131 189 - -
Vra3g0231 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0231 Vra-Chr3 2598085 2611619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0231 7 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.295 1.47e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0231 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0231 - - gmx:100814124 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0231 3 2598085 2611619 Vra3g0231 3 2598085 2611619 ECH
Vra3g0231 3 2598085 2611619 Vra8g0260 8 3321567 3329010 PCT