Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0229 ATGCCAATGCATCATCTTCTTTTATCACTCTTTCTCTTCTTCGTTGTTCCTCCAGCCACCTCTCTCAACTCTGACGGGCTCTCCCTGCTTGCCCTCAAAGCCGCCGTAGACTCCGATCCCACCGGCGTCCTCAGCTCCTGGTCAGAAAACGACGCCACTGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACGCAGCTCTCTCTCCCTGACAAGAGCCTCAGCGGTTACATTCCCTCTGAACTGGGATTTCTCAGCTCCCTCAAAAGACTCAGTCTTCCATACAACAACTTCTCCAACGTCATTCCTCCCTCTCTCTTCAACGCCACAACCCTCATTGTCATCGACCTCTCTCACAACTCGCTCTGTGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACTCTCAATCTTTCTTTCAACTTCTTCTCCGGCGGGATTCCGGCCACCCTTGCTAACCTGCCTGTGGCTGTGAGCCTCGACCTCCGCAACAACAACCTCACCGGGAAAATCCCCCAGGTGGGATCCCTGCTAAACCAGGGTCCCACCGCGTTTTCTGGCAACCCTGGACTCTGTGGCTTCCCCTTGCAAACCGCATGCCCTGAAGCGCAAAAGCCTGGGATTTTCGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTCCACCCCGAAGGCTCAGACCAGAGAGTGAAACCACACGGTGGCGGCTCCGTCGCTGTTCTGGTCATCTCCGGGCTTTCAGTCGCGGTTGGAGCGGTTTCTCTCTCTTTATGGGTTTTCCGGCGACGGTGGGGCGGCCGCGAGGAGGGGAAATTGGGGGGGCAGAAGTTGGAGGGTGAGGTGGATGTGGGCGAGGGGCAAGATGGTAAATTTGTTGTGGTGGACGAATGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTAGTCGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTGGTGGCTGTTAGGCGACTCAGTGAGGGTGATGCCACGTGGCGATTTAAGGAGTTTGAGTCTGAGGTGGAGGCCATTGCAAGGGTTCGTCACCCCAACGTGGTTCCTTTGAGAGCATATTATTATGCCCATGATGAGAAGCTGCTTATCACTGATTTCATTCGCAATGGAAGTTTGCACACTGCTTTACACGGTGGGCCTTCCAATTCATTGCCACCATTGTCATGGGCAGCAAGGTTAAAAATTGCTCAAGAAGCAGCCAAGGGCTTGATGTACATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATTAAGGCAACAAAAATCTTACTAGACGATGAGCTCCATGCATACGTGTCAGGTTTTGGACTTTCTCGGCTTGGTTTGGGCCCGCCAAAGTCTACTGCAATGCCTCCAAAACGGAACAGCTTGAACCAATCTTCTGTAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTTAACCACTACCTGGCACCTGAGGTGCGTATGGCCGGTGGCAAGTTCACTCAGAAATGTGATGTGTATTCATTTGGCATTGTGCTTTTGGAACTCTTGACGGGTAGGATGCCAGATTTTGGAGCAGAAAATGATGAGAAGGTGCTGGAGAGTTTTGTGAGGAATGCGTTCAGGGAGGAGCAGCCACTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTGCTGCATTTCATATTGCTCTGAACTGCACCGAACTCGATCCAGAGTTGCGACCACGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCAAATACAGTGAAAAACAAGAAAACCATGTATAG 1962 0.5214 MPMHHLLLSLFLFFVVPPATSLNSDGLSLLALKAAVDSDPTGVLSSWSENDATACHWPGVSCTGDRVTQLSLPDKSLSGYIPSELGFLSSLKRLSLPYNNFSNVIPPSLFNATTLIVIDLSHNSLCGSLPSHFLSLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNFFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKPHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGREEGKLGGQKLEGEVDVGEGQDGKFVVVDEWFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGPSNSLPPLSWAARLKIAQEAAKGLMYIHEFSGRKYIHGNIKATKILLDDELHAYVSGFGLSRLGLGPPKSTAMPPKRNSLNQSSVTTAMSSKVAASFNHYLAPEVRMAGGKFTQKCDVYSFGIVLLELLTGRMPDFGAENDEKVLESFVRNAFREEQPLSDIIDQALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSESLDHIKYSEKQENHV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0229 653 ProSiteProfiles Protein kinase domain profile. 340 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0229 653 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Vra3g0229 653 Gene3D Phosphorylase Kinase; domain 1 323 422 - -
Vra3g0229 653 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vra3g0229 653 Gene3D Ribonuclease Inhibitor 137 233 IPR032675 -
Vra3g0229 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 645 - -
Vra3g0229 653 MobiDBLite consensus disorder prediction 243 262 - -
Vra3g0229 653 Gene3D Transferase(Phosphotransferase) domain 1 423 653 - -
Vra3g0229 653 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Vra3g0229 653 SUPERFAMILY L domain-like 24 228 - -
Vra3g0229 653 SUPERFAMILY Protein kinase-like (PK-like) 345 645 IPR011009 -
Vra3g0229 653 Pfam Protein tyrosine and serine/threonine kinase 346 639 IPR001245 GO:0004672|GO:0006468
Vra3g0229 653 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 2 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0229 Vra-Chr3 2569334 2573147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0229 22 644 Receptor kinase-like Gene Family AT3G57830 59.091 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra3g0229 PK_Tyr_Ser-Thr 4.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0229 - - gmx:100796011 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0229 3 2569334 2573147 Vra3g0229 3 2569334 2573147 ECH