Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0228 ATGGATTCCAATTCCCGTTACCAACTTCAGCAACAACACCAGCCCAATTCCGGCTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTCGCCAACTTCAAACAACCCGAAGCTTCTTCCGTCAACGCCAACCCCTGGGAGGGTTCTGAACCACTTTTAAGATTCTTCAATTCCGGCGACACCCTCGATACGACATCCCCTACCTTACGAGAATTCGTAGATAACAAGGTTTCTAATGAGAATAAACAACCGAAGGAGTCAACAATATCGTCCTCCTCCTCATCATTATCACCTCTGACTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTCGGTACCCGAGGCATGACTCTACAGTAACTGTTTCTTCATCTATGATGGTGGGTTCTGTGGGAATGGATCAGGGCGGAAAAATCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAGCATCTCCTTTCACAACGGGTACGATGGTATGAAAGGTGTTGAAAACTTTGGTGGTGTTAATGGCATTGATGGTGAGCATAGAATATCTATGAACAGAATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCTTCTTTGGGAATTTTATCACCAACCTCTAAAATGGGCACGGAGGGTCTTAGGGTAACTAGCCCCGAGGATGGTAGACATGGAGGTAGCAATGGTGATGCTCGATATTACGGCCCTGGATTCCCTTATGCTTCTTGGAATGAGACGTCAAACGCCAAAAGACAACGAAATAGTAATGATGAATTACTTTCTGAAGCTCAGAACGGAGAGCTGGGAAATCAAGTTCATTCTCTTTCGTATCATTTGAGTTTGCCAAGAACGTCCTCGGAGATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAATATGGAGAAGCAAACCAGCACAGCAGAGATGTTAGACTTGGCTGTAGACTACATAAAGAACCTTCAGAATCAATTCAAGAATCTGAGCGAAAGAAGGGCTAAATGCAAATGTACAAACATGCAGAAACCAGAAACAGATAAAATTGCTTGA 1197 0.4378 MDSNSRYQLQQQHQPNSGLLRFRSAPTQVLANFKQPEASSVNANPWEGSEPLLRFFNSGDTLDTTSPTLREFVDNKVSNENKQPKESTISSSSSSLSPLTRMNSQQGYSTSVLPSRYPRHDSTVTVSSSMMVGSVGMDQGGKIFNPNLLRQSSFPSGNFSNSISFHNGYDGMKGVENFGGVNGIDGEHRISMNRMKNHISFSPRSPSSLGILSPTSKMGTEGLRVTSPEDGRHGGSNGDARYYGPGFPYASWNETSNAKRQRNSNDELLSEAQNGELGNQVHSLSYHLSLPRTSSEMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKNLSERRAKCKCTNMQKPETDKIA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0228 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 387 IPR036638 GO:0046983
Vra3g0228 398 MobiDBLite consensus disorder prediction 200 240 - -
Vra3g0228 398 MobiDBLite consensus disorder prediction 64 120 - -
Vra3g0228 398 MobiDBLite consensus disorder prediction 200 222 - -
Vra3g0228 398 Coils Coil 360 387 - -
Vra3g0228 398 Coils Coil 333 353 - -
Vra3g0228 398 MobiDBLite consensus disorder prediction 82 120 - -
Vra3g0228 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Vra3g0228 398 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g0228 398 CDD bHLH_AtbHLH_like 325 378 IPR045239 -
Vra3g0228 398 Gene3D - 322 393 IPR036638 GO:0046983
Vra3g0228 398 PANTHER TRANSCRIPTION FACTOR BHLH130 11 390 - -
Vra3g0228 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 390 - -
Vra3g0228 398 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Vra3g0228 398 SMART finulus 326 376 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0228 Vra-Chr3 2555703 2558754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0228 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.785 3.38e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0228 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0228 - - gmx:100814652 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0228 3 2555703 2558754 Vra3g0228 3 2555703 2558754 ECH
Vra3g0228 3 2555703 2558754 Vra2g0525 2 4105581 4109546 ECH
Vra3g0228 3 2555703 2558754 Vra8g0257 8 3252600 3256138 PCT