Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0226 ATGGATGAAGCTGGTGCTACCTTTTTGAGTTACTTCATCTCGTTCTCCTTAGCCTTCCTTGTTTTGACTCTACTTTTCAAGTCCCTTGGCACTTTAAGAACCAAAAATGGCAGTGTTCGACCTCCACCAACTCCACCGTCACTTCCCATCATCGGCCATCTCCACCTCGTGGGTTCTGTCGTACCAAAATCATTCCAAGTTCTGGCTCGTCAATATGGCCCTCTCATTCAGCTCCATTTAGGTGCCTCAACATGTGTAGTTGTCTCCAACGCCCAAGTCGCCAAAGAAGTGATGAAAACTCATGACCTCAATTTCTGCAACCGACCCCAGTTTGGATCCGCAAACAACTTCTTATACAAAGGTTCTAGTTTCGTCACTGTCCCATATGGCCCTTATTGGCGCTTCATCAAGAAGCTTTGCGTTACTCAACTTCTCTCCACCACGCAGCTTGGGCGCTTCCGGCACATCCGAGAGCAGGAGATACATAAGCTCTTGAAATCTCTTGCTGAGTGTTCCTCCGAAGGAAGGGACACGGATTTGAGCCGTGAACTCACTGGTTTGACCAACAACATCCTGTGTCGGATGGCCATGAGTACTACCTGTTTGGACAACGTTGATGCCGAGGATATTCTTGGCCTGGTGAGGGAGTTCATGCACTTGGGAGCTAAGTTGAGCATGGGTGAAGTGTTGGGACCGTTGGGAAAGTTTGACTTGTTTGGGTATGGGAAGAAGCTTGCTAGAGTAGTTGGCAAATTCGATCGGGTTTTGGAGCGCATCTTAGAGGAACACGAAGTGGAAAACTCTGAAAGAGGAGACATGATGGATATTCTACTGCGAGTCCACAAAGACCCGAATGCTGAAATGAGGTTAAAAAGGAATGATATCAAGGCCTTCTTCCTAGATATTTTCCTAGCGGGAACAGACACGTCTTCAACAGCGTCCCAATGGGCCATGGCAGAAATCATGAACAACCCAGGAGTGTTGAGGAAGGTGAGGGCAGAGATTGATGCAGTGGTGGGTTCTAGCAGGTTGGTCACTGAATCAGACCTTCCAGATCTTCGTTATCTCCAAGCTGTTGTGAAGGAAGTTCTAAGACTCCACCCAACAGCACCGTTTGCTCTTAGACAATCAGCAGAGGACTGCACCATCAATGGGTATGGTATAAAGGGCCAGACACGGACACTGATCAATGTGTACGCCATCATGCGGGACCCAGAAGCGTGGGTCAACCCAGAGGAGTTTATACCAGAAAGGTTCTTGGAAGACAGTGATGGGATGAAGGGTGGAGCTGAAGGCATAACTACAATGAACGGTGGTGATTTCAGGTACCTTCCATTTGGGTCTGGGAGGAGGGGTTGCCCTGGATCTTCCCTTGCCTTAACTGTCATACAAGTGACAGTTGCATCGCTGATCCAATGTTTTGAATGGAAGACGAAAGGGGGAGAAAGGGTTTGTTTAGAAGAAGGTTCATCATTTTCTACAGGATTGGCAAAGCCACTTGTTTGTTATCCTGTTACTCGTTTCACTCCTTTTTAA 1536 0.4766 MDEAGATFLSYFISFSLAFLVLTLLFKSLGTLRTKNGSVRPPPTPPSLPIIGHLHLVGSVVPKSFQVLARQYGPLIQLHLGASTCVVVSNAQVAKEVMKTHDLNFCNRPQFGSANNFLYKGSSFVTVPYGPYWRFIKKLCVTQLLSTTQLGRFRHIREQEIHKLLKSLAECSSEGRDTDLSRELTGLTNNILCRMAMSTTCLDNVDAEDILGLVREFMHLGAKLSMGEVLGPLGKFDLFGYGKKLARVVGKFDRVLERILEEHEVENSERGDMMDILLRVHKDPNAEMRLKRNDIKAFFLDIFLAGTDTSSTASQWAMAEIMNNPGVLRKVRAEIDAVVGSSRLVTESDLPDLRYLQAVVKEVLRLHPTAPFALRQSAEDCTINGYGIKGQTRTLINVYAIMRDPEAWVNPEEFIPERFLEDSDGMKGGAEGITTMNGGDFRYLPFGSGRRGCPGSSLALTVIQVTVASLIQCFEWKTKGGERVCLEEGSSFSTGLAKPLVCYPVTRFTPF* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0226 511 SUPERFAMILY Cytochrome P450 39 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Vra3g0226 511 PANTHER CYTOCHROME P450, FAMILY 712, SUBFAMILY A, POLYPEPTIDE 1 5 511 - -
Vra3g0226 511 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 Pfam Cytochrome P450 42 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 Gene3D Cytochrome P450 30 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0226 511 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0226 Vra-Chr3 2523220 2525200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0226 16 511 Cytochrome P450 AT2G42250 52.684 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0226 - - gmx:106794180 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0226 3 2523220 2525200 Vra3g0226 3 2523220 2525200 ECH
Vra8g0255 8 3229887 3231624 Vra3g0226 3 2523220 2525200 PCT