Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0225 ATGGCTGATTACCAACACTACATCCTTCTTTTCATCACATTTTTAGTCTCCGCAATCGTGGTTCGAGCCATATTCAGCAGAAAACAAAACAAGACTAATAATAGACCACCAAGTCCGCAAGCCTTACCCATCATTGGACATCTCCACCTTCTGGCTCCAATACCTCACCAGGCTCTTCACAAGCTCTCTACTCGCTATGGTCCCATAATGCACCTTTTCCTTGGTTCCGTGCCTTGTGTAGTCGCTTCCACGCCAGAAGCTGCCAGAGAATTCCTAAAAACTCACGAAACCCGTTTCTCCAACCGCCCGCAAAGTTCTGCAGTTGATTTTCTGACATACGGCTCCCAGGACTTCTCTTTTGCGCCATATGGACCTTATTGGAAGTTCATGAAGAAAATATGCATGTCTGAACTTCTGGGGGGTTCCACGTTAAGTCAGCTACTTCCTGTGAGGAGACAAGAGACGATAAGGTTTCTGAGGCTTATGCTCAAGAAAGGGAAGGCGGGTGAGGCTGTTGATGTTGGGGGCGAACTTCTAAGACTCTCGAATAACGTTGTGTCGAGGATGATTATGAGCCAAACGTGTTCTGAAGATGACAGTGAAGCTGAAGAGGTGAGGAAGTTGGTGCAAGACACTGTTCTTCTCACGGGGAAGTTTAACGTGTCGGATTTCGTTTGGTTCTTTAAGAACTGGGACGTGCAGGGGTTCGGGAAGAGACTGAAGGAAATTCGGGACAGGTTTGACACCATGATGGAGAGGGTGATCAAGGAGCATCAAGAGGAAAGAAAGAAGAGAAAGGAAGTGGGAAGTGGAAGAGATGATGATCATATCAAGGATCTACTTGATGTGTTATTGGACGTACATGAAGATGAGAACTCTGACATAAAATTGACAAAAGAGAACATAAAGGCCTTCATCTTGGACGTATTTATGGCAGGAACAGACACTGCGGCCTTGACAATCGTATGGGCTCTGGCTGAGTTGATCAACCACCCAGATGTGATGGAGAGAGCAAGGCAAGAGATTGATGGTGTGATTGGAAGTGGTAGATTAGTAGAAGAATCAGACTTTGTCAACCTTCCTTACCTACAAGCTATAGTCAAAGAAACGCTGAGGATTCACCCCACAGGTCCATTGATTGTTAGAGAATCGTCTGAAAGCTGCAATATCTGGGGCTATGAGATTCCACCAAAGACTCAGTTGTTTGTTAATGTGTGGGCTATTGGTAGGGATCCCAACCACTGGGAGAACCCACTTGAGTTTAGACCAGAGAGGTTTCTTAGTGAAGAGGGAAGTGGTAAGAGCCCGTTAGATGTGAGGGGACAGTATTTTCATCTGATTCCGTTTGGGAGTGGAAGACGAGGTTGTCCTGGAACCTCACTGGCTTTGCAGGTTGTACAGACTAACCTTGCTGCTATGATTCAGTGCTTTCGATGGAAGGTTAAAGGAGAAAATGAGAGTGTTGACATGGAAGAGAAACCTGGGTTAACTCTTTCAAGGGCTCATCCATTGCTTTGTGTTCCCGTGCCTAGGCTTAATCCTTTTCCTCCCCTGTCATACTCATCACCATAA 1572 0.4593 MADYQHYILLFITFLVSAIVVRAIFSRKQNKTNNRPPSPQALPIIGHLHLLAPIPHQALHKLSTRYGPIMHLFLGSVPCVVASTPEAAREFLKTHETRFSNRPQSSAVDFLTYGSQDFSFAPYGPYWKFMKKICMSELLGGSTLSQLLPVRRQETIRFLRLMLKKGKAGEAVDVGGELLRLSNNVVSRMIMSQTCSEDDSEAEEVRKLVQDTVLLTGKFNVSDFVWFFKNWDVQGFGKRLKEIRDRFDTMMERVIKEHQEERKKRKEVGSGRDDDHIKDLLDVLLDVHEDENSDIKLTKENIKAFILDVFMAGTDTAALTIVWALAELINHPDVMERARQEIDGVIGSGRLVEESDFVNLPYLQAIVKETLRIHPTGPLIVRESSESCNIWGYEIPPKTQLFVNVWAIGRDPNHWENPLEFRPERFLSEEGSGKSPLDVRGQYFHLIPFGSGRRGCPGTSLALQVVQTNLAAMIQCFRWKVKGENESVDMEEKPGLTLSRAHPLLCVPVPRLNPFPPLSYSSP* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0225 523 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 516 - -
Vra3g0225 523 PANTHER CYTOCHROME P450 FAMILY PROTEIN 4 516 - -
Vra3g0225 523 Pfam Cytochrome P450 36 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 SUPERFAMILY Cytochrome P450 36 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vra3g0225 523 Gene3D Cytochrome P450 25 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0225 523 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0225 Vra-Chr3 2520122 2521910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0225 1 511 Cytochrome P450 AT5G06900 49.903 0.0 527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0225 3 2520122 2521910 Vra3g0225 3 2520122 2521910 ECH