Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0224 ATGGCCTTTCAACTGTCACTCATTTGTTTGATCTCCACCATCGTGATTGCGTTCATACTATGGAGAAAACAAAAGAAGACCCTCCTTCCACCAAGTCCAATGGCCCTCCCCATCATTGGTCACCTCCACCTTCTCTCCACAATACCTCACCGAGATTTTCACAAGCTCTCAATCCGTTATGGACCCATCATGCACCTTTTCCTCGGTTCAGTCCCTTGTGTGGTGGCTTCAACCGCAGAAGCCGCCAAAGACTTCCTCAAAACTCACGAATCCTCCTTCTCCAACCGCTTTGCTCAAACCGTCGCCATTGAGGCCTTAACCTACGGCTTCCAAGACTTTTTCTTCGCACCTGACGGACCCTATTGGAGGTTCATGAGGAAACTGTGCATGTCTGAACTTCTCGGTGGCCAAATGTTAGACCAGCTCCTTCCCGTGAGGCAGCAAGAGAGCAAGAGATTCATTCAACACCTGCACCGAAAAGGGGTGGCTGGTGAGGCCGTGGATTTTGGAGGAGAGTTGATGACACTCTCGAATAACATCGTGTCGAGAATGACTGTGGGTCACACGAGTACTGAAAACCAGAAGGACGTTGAAGAGATGAGAAAGCTGGTGGCGGATGCCGCTGAGCTTGTGGGGAAGTTCAACATATCGGACTTCATTTGGTTCTTCAAGCGTCTCGATTTGCAGGGATTCAACATGAGGCTCAAGCAAACTCGGGACAGATTTGATGCTGTGTTAGACAGAATCATAAAGCAGCGTGAAGAGGAAAGAAGGAACAACAAACAAACCGGTGGAACACGACCGTTTAAGGATATGCTTGATGTTTTGTTGGACATCTTCGAAGATGGGAGTTCTGAAATAAAACTAAACAAAGAGAATATTAAGGCCTTCTTCCTGGACATATTTGTTGCTGGGACTGACACGACATCATTAACCATTGAATGGGCTCTGTCAGAGTTAATAAACCATCCACATGTGTTGGAGAAGGCAAGGCTAGAAATAGATGCAGTTGTTGGAAAGAGTAGAATCGTAGAAGAAGCAGACATTAAGAACCTTCCTTACCTGCAAGCCATTGTTAAGGAAACATTCAGGCTTCACCCACCTGGTCCATTACTTACTAGAGAGTCATCAACAAGTGAAGTGGTATGTGGATATAATATTCCAGCCAAAACTCGACTATTTATCAACATTTGGGCTATTGGCAGAGATCCCGATCAGTGGAAAAACCCTCTTGAGTTCATGCCAGAGAGGTTTATTGATGAAGAGGGAAATGGGCATAGTGAATTTGATGTTAGGGGACAAAGTTATCATCTTCTTCCTTTTGGAACTGGAAGAAGAAGGTGCCCTGCTATTTCTCTGGCATTACATGTTCTGCATGTGAATCTTGCTGCACTGATTCAGTGTTTCCAATTAAAGGTTAATGGTGGAGATGGCAAGGTGGACATGGAAGAAAAGCCTGGCTTCACTCTTCCAAGGGCTCACCCCTTAATCTGTGTCCCTGTTCCAAGGCTTAACCCATTCCCTGCTATATGA 1533 0.4579 MAFQLSLICLISTIVIAFILWRKQKKTLLPPSPMALPIIGHLHLLSTIPHRDFHKLSIRYGPIMHLFLGSVPCVVASTAEAAKDFLKTHESSFSNRFAQTVAIEALTYGFQDFFFAPDGPYWRFMRKLCMSELLGGQMLDQLLPVRQQESKRFIQHLHRKGVAGEAVDFGGELMTLSNNIVSRMTVGHTSTENQKDVEEMRKLVADAAELVGKFNISDFIWFFKRLDLQGFNMRLKQTRDRFDAVLDRIIKQREEERRNNKQTGGTRPFKDMLDVLLDIFEDGSSEIKLNKENIKAFFLDIFVAGTDTTSLTIEWALSELINHPHVLEKARLEIDAVVGKSRIVEEADIKNLPYLQAIVKETFRLHPPGPLLTRESSTSEVVCGYNIPAKTRLFINIWAIGRDPDQWKNPLEFMPERFIDEEGNGHSEFDVRGQSYHLLPFGTGRRRCPAISLALHVLHVNLAALIQCFQLKVNGGDGKVDMEEKPGFTLPRAHPLICVPVPRLNPFPAI* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0224 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Vra3g0224 510 Gene3D Cytochrome P450 21 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 508 - -
Vra3g0224 510 SUPERFAMILY Cytochrome P450 30 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 Pfam Cytochrome P450 30 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 508 - -
Vra3g0224 510 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0224 510 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0224 Vra-Chr3 2517356 2519566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0224 7 503 Cytochrome P450 AT5G06900 48.697 1.24e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0224 K24188 - gmx:100815706 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0224 3 2517356 2519566 Vra3g0224 3 2517356 2519566 ECH
Vra8g0254 8 3199693 3203173 Vra3g0224 3 2517356 2519566 PCT