Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0214 ATGGAAGCACGTTCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACACAATAACATGGGGATGTCTGAAGGATTTCCTTCATCGTTGCCTGTCCTTTCAATGCCTCTAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGAGCTTAAATCAAAACCTTTTACTCATTCAAATCATTTAACTACCAGCGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTATAAATACTCCTTTTATTTCACAGTCATTGAGTAACATGGCTTCACTGCCATTATCTTATTCTTCAAACAGTGAACCATTACCTTCTACAACATCAACACCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGACTCCCTGTCCAGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGTAGAAAGCAATGCCTGCAATATTATGGCAAATGAAGAGTATTCTACTAAGCGAAGTGATTGGCAAGAGTGGGCTAACCAGTTAATCAGTGATGATGATCCATTGACTGCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCGAAGGCCTCAAATTCATCTTCACAACTTCCAATAGGACACCAATCCCAAAGCCATCAACAACTTAGTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCGTCAGCAAATTCAGTACCTTCCAAGCCACGAATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACACCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGGCCTGAGTCATCTGAAGGAGCTGCCGAGAAAAAACTAAGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCGTCTGCCGGTGATAGTCCATCTGGAATTTCTTCTGATGTCATGAAAGATTCTACAGCCAAAGCTGATTCCGAAACTGTCAAAGTGGATTTTTGCGAGTCAGGACCTGATCAAGCCAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAATGGATGAGAAGCAGGATCCTGCTGAATGTAAAGCATCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTTCTCAAGCCCCAAAGCGTCAAAGGACTGAGGATTAA 1458 0.4129 MEARSTFSIERSNAKQHNNMGMSEGFPSSLPVLSMPLEGTCPKLSDSQPAFMEKELKSKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPINTPFISQSLSNMASLPLSYSSNSEPLPSTTSTPYSNGNSVSWHTDSLSSFLDFPANTSIDNSQVESNACNIMANEEYSTKRSDWQEWANQLISDDDPLTANWNDLLADNIQDLEPKASNSSSQLPIGHQSQSHQQLSVSSGENRVGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAGDSPSGISSDVMKDSTAKADSETVKVDFCESGPDQANGSTKVEESSSKMDEKQDPAECKASENPKQHASEDSSQAPKRQRTED* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0214 485 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Vra3g0214 485 Gene3D - 258 317 - -
Vra3g0214 485 Coils Coil 347 367 - -
Vra3g0214 485 MobiDBLite consensus disorder prediction 215 259 - -
Vra3g0214 485 MobiDBLite consensus disorder prediction 446 485 - -
Vra3g0214 485 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Vra3g0214 485 MobiDBLite consensus disorder prediction 215 261 - -
Vra3g0214 485 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0214 485 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Vra3g0214 485 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Vra3g0214 485 MobiDBLite consensus disorder prediction 397 485 - -
Vra3g0214 485 MobiDBLite consensus disorder prediction 397 416 - -
Vra3g0214 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 316 IPR017930 -
Vra3g0214 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 484 - -
Vra3g0214 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 484 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0214 Vra-Chr3 2439948 2447359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0214 55 433 G2-like Transcription Factor Family AT4G28610 52.699 8.31e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra3g0214 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0214 - - gmx:100810560 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0214 3 2439948 2447359 Vra3g0214 3 2439948 2447359 ECH
Vra8g0911 8 20252319 20259168 Vra3g0214 3 2439948 2447359 ECH
Vra3g0214 3 2439948 2447359 Vra8g0911 8 20252319 20259168 PCT