Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0213 ATGACAACTTTCCAAAAGGTTCATGCTTTAGCCTTTCGTATACTCTTTCTAGCTTTGCTTCCATTGAAAATCGCTTCATCACCAACAGCAGAAGCAGAAGCCCTTGTCAAATGGAAAAATAGTCTAACACCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTTTCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTTAGAGATAAACTTGTCTGGTGCTAATCTCACTGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAACTTTGAGGGGTCAATACCATCAGAAATTGGCAAACTCTCCAAGCTCACACTATTAGACTTGGGGAACAACTTATTTGAAGACACACTGCCTAAAGAACTAGGCCAGCTAAGGGAGCTTCAATATCTCAGCCTTTACAACAACTATCTCAATGGCACCATTCCTTATCAGCTAATGAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTGACTGGTCTCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTCAATTCCCCAGTTTTATACTGGAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATGGATGGAATGGCACTATACCAGAATCTTTCTATAGCAATTTGGGCAAGCTAGAATACCTCAACCTCTCCAACAATGGGTTTGGAGGAAAGCTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATTGGTTATAACATGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAATAGCATTTCTGCCTATGGGAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTATGGCATCTTGATCTCAGTATAAATTCTTTTAACTCTACAATCCCTTCGGAGCTTGGCCTGTGCACAAATCTATCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAACTCCTTTTCTGGTGAACTTTCTGCTACGTTCCTCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACTGGAAAGCTTCCTCCACATATTGGCTTGTTGAAAAAAATTAACTTTCTCTACCTATACAATAATCACTTCTCTGGTCCCATTCCTGTGGAGATTGGAAACCTGAAGGAAATGACAGGGTTAGACCTTTCAACAAATCAATTCTCTGGCCCAATTCCATCAACTCTTTGGAATCTGACTAACATTCAAGTCATGAATCTTTTCTTCAATGAGTTCTCTGGAAATATCCCCACGGATATTGGAAACTTGACCTCACTCCAAATCTTTGATGTCAACAACAATAACTTGTACGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAGAAATTTTTCTGTGTTCAGCAATAACTTCACTGGCAGCATTCCTAGACAATTTGGAAAGAGTAATCCTTCTTTGAACCACGTCTACCTTTCAAACAACAGTTTCTCAGGAGAACTGCCACCTGACATATGCAGTGGGGGCAAACTAACAATTTTTGCAATCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTCCATCACTTATTAGAGTTCGGCTTGATGATAACCAGCTCACTGGAAACATCACAGATGCATTTGGGGTTCTCCCTAATCTTGTTTTTATCTCGCTTAATACAAATCAACTTGTGGGTGAGCTATCTCCGGAGTGGGGCGAGTGTGCCAGCTTAACCAGTATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGACTCAATTAAGGTATCTAAGCCTTCATTCCAATGAATTCACTGGTAGTATCCCACCCGAAATCGGAAATCTAAGCCTGCTTTACACATTCAATTTGAGCAGTAACCATTTATCCGGAGAAATCCCAAAGAACTATGGGAGACTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATTGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGACCTCTTCCCCAAAACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCATATATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATCTGTTGATTTTTCTTACAACAAACTGAGTGGTTCAATCCCCACGGGCCGTGTTTTCGAGACAGCAACTGCTGAAGCCTATGCTGGGAACTCGGGTTTGTGTGGTGAGATAGAAGGACTAACTTGCCCCAATTCACTTTCCCCTGACAAATCTGGAGGAGTTAACAAATATGTTCTTCTTGGGGTCATCATTCCAGTTTGTATATTAATTGGGTTAATTAGTGTTGGAGCAATTCTTCGCCGGCGGCATATAAAAAAACACCTTGATGAAGAGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGCACTGCGTTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGCCAAGTCGTTGCTGTGAAGAGGCTCAACATATTAGACTCCGATGACATTCCACCAATAAACCGCCAGAGCTTTTTGAATGAGATAGAAGCACTTACAGCAGTGAGACACCGCAATATAATAAAGCTTTATGGATTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATATAGACAGAGGAAGTTTGGCAAAAGTGTTGTACGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCCACAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGCTCCCCACAAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTTCGACTTTGAACCTCATCTTGCAGATTTTGGCACAGCAAAGATCCTAAGCTCAGACACTTCAACGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTGTTCAAACAAGTATTTGTCATCAACAGAGGAACCACAGGTGCTACTGAAAGACGTGCTAGATCAAAGGCTTCCACCTCCATCAGGCCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGTTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCATGATAACCATGAACAAGCTTAGAGGCTTCCAGAAGTAG 3684 0.4207 MTTFQKVHALAFRILFLALLPLKIASSPTAEAEALVKWKNSLTPPLPPSLNSWSLTNLSNLCIWDAIVCDNTNTTVLEINLSGANLTGTLSALDFASLPNLTQLNLNANNFEGSIPSEIGKLSKLTLLDLGNNLFEDTLPKELGQLRELQYLSLYNNYLNGTIPYQLMNLPKVWYMDLGSNYFITPLDWSQYSCMPSLTRLALHLNPTLTGQFPSFILECHNLTYLDISQNGWNGTIPESFYSNLGKLEYLNLSNNGFGGKLSPNLSMLSNLKELRIGYNMFNGPVPTEIGLISGLQILELNSISAYGKIPSSLGQLRELWHLDLSINSFNSTIPSELGLCTNLSFLSLAVNDLTGPLPMSLANLTKISELGLSDNSFSGELSATFLSNWTQLISLQIQNNNFTGKLPPHIGLLKKINFLYLYNNHFSGPIPVEIGNLKEMTGLDLSTNQFSGPIPSTLWNLTNIQVMNLFFNEFSGNIPTDIGNLTSLQIFDVNNNNLYGELPATIAQLTALRNFSVFSNNFTGSIPRQFGKSNPSLNHVYLSNNSFSGELPPDICSGGKLTIFAINNNSFSGPLPKSLRNCPSLIRVRLDDNQLTGNITDAFGVLPNLVFISLNTNQLVGELSPEWGECASLTSMDMGSNKLSGKIPSALSKLTQLRYLSLHSNEFTGSIPPEIGNLSLLYTFNLSSNHLSGEIPKNYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGPLPQNLEKLRALEILNVSHNHISGTIPRSFSSMLSLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPNSLSPDKSGGVNKYVLLGVIIPVCILIGLISVGAILRRRHIKKHLDEESKSNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKHCVGKGGFGSVYRAQLPTGQVVAVKRLNILDSDDIPPINRQSFLNEIEALTAVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLAKVLYGEEGKLELSWATRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDFDFEPHLADFGTAKILSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLCSNKYLSSTEEPQVLLKDVLDQRLPPPSGQLAEAVVFTMTIALACIRESPESRPIMRVVAQELSATTQPYLSQPFSMITMNKLRGFQK* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0213 1227 Pfam Leucine Rich Repeat 779 799 IPR001611 GO:0005515
Vra3g0213 1227 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Vra3g0213 1227 SUPERFAMILY L domain-like 47 380 - -
Vra3g0213 1227 SUPERFAMILY Protein kinase-like (PK-like) 904 1202 IPR011009 -
Vra3g0213 1227 Gene3D Ribonuclease Inhibitor 387 507 IPR032675 -
Vra3g0213 1227 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 6 123 - -
Vra3g0213 1227 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 124 1222 - -
Vra3g0213 1227 ProSiteProfiles Protein kinase domain profile. 928 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0213 1227 SUPERFAMILY RNI-like 534 818 - -
Vra3g0213 1227 Gene3D Phosphorylase Kinase; domain 1 888 1008 - -
Vra3g0213 1227 Gene3D Ribonuclease Inhibitor 509 848 IPR032675 -
Vra3g0213 1227 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Vra3g0213 1227 Gene3D Ribonuclease Inhibitor 191 286 IPR032675 -
Vra3g0213 1227 Gene3D Ribonuclease Inhibitor 287 386 IPR032675 -
Vra3g0213 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1054 1066 IPR008266 GO:0004672|GO:0006468
Vra3g0213 1227 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Vra3g0213 1227 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 124 1222 - -
Vra3g0213 1227 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 123 - -
Vra3g0213 1227 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Vra3g0213 1227 CDD STKc_IRAK 934 1202 - -
Vra3g0213 1227 SUPERFAMILY RNI-like 288 620 - -
Vra3g0213 1227 Gene3D Transferase(Phosphotransferase) domain 1 1009 1213 - -
Vra3g0213 1227 SMART LRR_typ_2 438 462 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 122 146 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 536 559 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 776 799 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 486 510 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 703 727 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 607 631 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 655 679 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 245 269 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 98 121 IPR003591 -
Vra3g0213 1227 SMART LRR_typ_2 317 341 IPR003591 -
Vra3g0213 1227 Pfam Protein kinase domain 929 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0213 1227 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0213 Vra-Chr3 2434943 2439728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0213 1 673 Receptor kinase-like Gene Family AT4G08850 32.249 2.54e-83 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra3g0213 Pkinase 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0213 - - pvu:PHAVU_001G163700g 2040.39