Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0212 ATGCTAGACATGACAAAATTTCAAAGTCTTCACACTCTAGTCCTTCCAATTATCTTCCTGTGTTTCTTTCCTTTGAGAATCGCTTCATCACCAACAGCAGAAGCAGAAGCACTTGTCAAATGGAAAAACAGTCTAACACCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTTACCAAACTTTGCTTTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTCAGAGATAAACTTGTCTGCTGCCAATATCACTGGGACTATCACTTTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTTGATACCAACCGTTTTCGTGGCTCAATACCACCAGCAATTGGTAACCTCTCCAAGCTCACACTGTTGAACTTGGGGAACAACTTATTTGAAGATGCACTGCCTAAAGAACTAGGCCAGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTGACTGGTCTCAATATTCATGCTTGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTCAATTCCCCAGTTTCTTACTGGACTGCCGTAACTTGACATATCTTGACATCTCTCAGAATGGATGGAATGGAACTATTCCAGAATCTTTGTATAGCAATTTGGGCAAGCTAGAATTCCTCAACCTCACCAACAATGGGTTTGAAGGAAAGCTGTCACCCAACTTGTCCATGCTTTCAAATCTCATAGAACTTCGTATTGGTAATAACTTGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAATAACATTTCTGCCCATGGGAACATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCGTCTTGATCTCAGTATAAATTCTTTTAACTCTACAATCCCTTCGGAGCTTGGCTTGTGCACAAATATGTCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAACTCCTTTTCTGGTGAACTTTCTGCTACGTTCCTCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACTGGAAAGCTTCCTCCACATATTGGCTTGTTGAAAAAAATTAACTACCTCTTTCTGTACAATAATCACTTCTCTGGTCCCATTCCTGTGGAGATCGGAAACCTGAAGGAAATGACATGGTTAGACCTTTCAACAAATCAATTCTCTGGCCCAATTCCATCAACTCTTTGGAATCTGACTAAAATTCAAGTCATGAATCTTTTCTTCAATGAGTTCTCTGGAAATATCCCCACGGATATTGGAAACTTGACCTCACTCCAAATCTTTGATGTCAACAACAATAACTTGTACGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAAAAGCTTTTCAGTGTTCAGCAATAACTTCACCGGCAGCATTCCTAGAGAATTTGGTAAGGGAAATCCTTCTTTGACTTATGTCTACCTTTCAAACAACAGCTTTTATGGAGAACTGCCTCTCGACTTGTGCAGTGGTGGCCAGCTAACTATTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCACCACTAGTTAGAGTTCGGCTTGATAATAACCAGCTCACTGGAAACATCACAGACGCATTCGGGGTTCTCCCAAATCTCGTTTTGATATCACTTAGTACAAACCAACTGGTTGGTGAGCTCTCCCCGGATTGGGGCGGATGCGCCAACTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGCTGAGTCAATTAGGGTATTTAAACCTTCATTCCAATGAATTCACTGGTAGTATCCCACCTGAAATCGGAAATCTAAGCCGGCTTTTCAGATTGAATTTGAGCAGTAACCATTTATCAGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATTGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGGGCTCTTCCCCAAGACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGAGAATCCCACGATCATTTTCAAGCATGATCAGCCTTCAATCTGTTGATTTTTCTTATAATAAACTGAGTGGTTCAATCCCCACGGGCCGTGTTTTCGAGACAGCGACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAGAAGGATTAACTTGCCCCATATCACTTTCCCCTGAAAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTCATCATTCCAGTTTGTGTATTAATTGGGTTAATTAGTGTTGGAGCAATACTTCGCCAGCGGTATATCATAAAACACGCTGATGAAGAGTCTAAAAGCAATGAAAAAAGTGACCAGCCTATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGCCAAGTCGTTGCTGTGAAGAGGCTCAACATATCAGACTCTGATGACATTCCACCAATGAACCGCCTGAGCTTTTTGAATGAGATAGAAGCACTTACAGGAGTGAGACACCGTAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGAGAAATGTTCTTGGTTTATGAATATATAGACAGAGGAAGTTTGGCAAAGGTGTTGTACGGAGAGGAAGGAGAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGACTGTTCCCCACAAATCGTGCACCGGGATGTAACACTGAACAACATACTACTAGACTCCGATTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTATTAAGCCCAGACACTTCAACTTGGACTTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAACATCCTGGAGAACTGTTGGATACACTGTCTTCAGTCAAGTATTTGTCATCAAGGGATGAAGCAGAGGTGCTACTGAAGGACGTGTTAGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTAGTGTTCACAATGACGATAGCTTTGGCATGCACACGTGAGTTTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCATGATAACCATGAACAAGCTTAGAGGCTTTCAGAAATAG 3693 0.4227 MLDMTKFQSLHTLVLPIIFLCFFPLRIASSPTAEAEALVKWKNSLTPPLPPSLNSWSLTNLTKLCFWDAIVCDNTNTTVSEINLSAANITGTITFLDFASLPNLTQLNLDTNRFRGSIPPAIGNLSKLTLLNLGNNLFEDALPKELGQLRELRYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPLDWSQYSCLPSLTRLALHLNPTLTGQFPSFLLDCRNLTYLDISQNGWNGTIPESLYSNLGKLEFLNLTNNGFEGKLSPNLSMLSNLIELRIGNNLFNGPVPTEIGLISGLQILELNNISAHGNIPSSLGQLRELWRLDLSINSFNSTIPSELGLCTNMSFLSLAVNDLTGPLPMSLANLTKISELGLSDNSFSGELSATFLSNWTQLISLQIQNNNFTGKLPPHIGLLKKINYLFLYNNHFSGPIPVEIGNLKEMTWLDLSTNQFSGPIPSTLWNLTKIQVMNLFFNEFSGNIPTDIGNLTSLQIFDVNNNNLYGELPATIAQLTALKSFSVFSNNFTGSIPREFGKGNPSLTYVYLSNNSFYGELPLDLCSGGQLTILAVNNNSFSGPLPKSLRNCSPLVRVRLDNNQLTGNITDAFGVLPNLVLISLSTNQLVGELSPDWGGCANLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFTGSIPPEIGNLSRLFRLNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGALPQDLEKLRALEILNVSHNHLSGRIPRSFSSMISLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPISLSPEKSGGVNKKVLLGVIIPVCVLIGLISVGAILRQRYIIKHADEESKSNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLPTGQVVAVKRLNISDSDDIPPMNRLSFLNEIEALTGVRHRNIIKLYGFCSCRGEMFLVYEYIDRGSLAKVLYGEEGELELRWAKRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDLEPRLADFGTAKLLSPDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLDTLSSVKYLSSRDEAEVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACTREFPESRPIMRAVAQELSATTQPYLSQPFSMITMNKLRGFQK* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 386 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 283 428 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 304 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 419 1206 - -
Vra3g0212 1230 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Vra3g0212 1230 Gene3D Ribonuclease Inhibitor 193 289 IPR032675 -
Vra3g0212 1230 Gene3D Phosphorylase Kinase; domain 1 892 1011 - -
Vra3g0212 1230 Gene3D Ribonuclease Inhibitor 290 388 IPR032675 -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 386 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 419 1206 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 283 428 - -
Vra3g0212 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 304 - -
Vra3g0212 1230 Pfam Protein kinase domain 933 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0212 1230 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Vra3g0212 1230 SMART LRR_typ_2 101 124 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 779 802 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 610 634 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 489 513 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 658 682 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 320 344 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 248 272 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 441 465 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 706 730 IPR003591 -
Vra3g0212 1230 SMART LRR_typ_2 125 149 IPR003591 -
Vra3g0212 1230 Gene3D Ribonuclease Inhibitor 389 509 IPR032675 -
Vra3g0212 1230 SUPERFAMILY L domain-like 539 828 - -
Vra3g0212 1230 SUPERFAMILY Protein kinase-like (PK-like) 907 1205 IPR011009 -
Vra3g0212 1230 Gene3D Transferase(Phosphotransferase) domain 1 1012 1216 - -
Vra3g0212 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Vra3g0212 1230 SUPERFAMILY L domain-like 32 245 - -
Vra3g0212 1230 Gene3D Ribonuclease Inhibitor 513 850 IPR032675 -
Vra3g0212 1230 Pfam Leucine Rich Repeat 782 802 IPR001611 GO:0005515
Vra3g0212 1230 SUPERFAMILY L domain-like 195 552 - -
Vra3g0212 1230 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Vra3g0212 1230 ProSiteProfiles Protein kinase domain profile. 931 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0212 1230 CDD STKc_IRAK 937 1205 - -
Vra3g0212 1230 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0212 Vra-Chr3 2423283 2427578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0212 13 700 Receptor kinase-like Gene Family AT4G08850 33.188 3.97e-85 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra3g0212 Pkinase 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0212 - - pvu:PHAVU_001G163700g 2016.51