Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0208 | ATGGACGATTCCACAAAACCTAACGCAGGCAAACCCAAACTTCTCAATCCATGGATGCTTCACTTCCAGAAACTCGCTCTTGAACTCAAGTGTCCTCTCTGTTTGAGTTTGTTCAAGAAGCCTGTGTTACTTCCTTGCAACCACCTTTTCTGCGATTCATGCTTAGCTGATTGTGTAACAGCTGGGGCTGGTTCTGAATGTGCTGCTTGTAATGCAAAGTACCCTCAAACAGATGTAAGACACGTGCCTTTTGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGAGGCCACCTTTTGTGCAAGTTTGTTTCATAAACATTCTTCTGGTGATGAGAGGGTTTTGGAGCCATGCCAGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAGCTTCCTCTGAATTTGCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCAGTGCATGATAAAGCTGAGGAGCTTGAGTTGTCTCATGGAAGAGGGAAGCCTAATCTGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGCGATCAAGACAGTGAGCATCCACTACCTGATAGATTGGGAAACTCTTCCTTAAAGAGAGCTAGTACAGGAAATGGAAATTTGAATGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCGGAAACTGAGGGTCTTGAAAGGGATCCCAAAAGACAGAAAGTTCAGCCTACAGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCTAATGGAAACTTAGTTACTGGAGATGCAGCAATTAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCGGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCCGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTCCTTGTGCACTTGACATCCCAACATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCATGTGAGAAATCCAGGTCTAAGAAGCAGGCAGTGCGGAAGCATCCCAATTTGCCTCATTTGCCATCACACCACTCAAATACTCTTGAAGCTTCACAGGATGAGGGTAAAAATATGGTTTTCTGTGGATCTGCTTTATCAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACAGTGACGAAATTCTGGACCTCAAATGTTACACATGTAATAGCGTCAACTGATGCTAATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACAATGGGTACTAAAACTAGATTGGATAAAAGCATGCATGGAAGAGAAAAATCCCGTAGAAGAAGAACCTTATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCGGGCAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAGTTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTAGAAGCTCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAACGATGCAGAGGACTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA | 1983 | 0.4186 | MDDSTKPNAGKPKLLNPWMLHFQKLALELKCPLCLSLFKKPVLLPCNHLFCDSCLADCVTAGAGSECAACNAKYPQTDVRHVPFVENVVAIYKSLEATFCASLFHKHSSGDERVLEPCQAILNSTSSSIQAGKLPLNLPNLNKVGVVKNLKSKIAVHDKAEELELSHGRGKPNLMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPDRLGNSSLKRASTGNGNLNEKMGQLRSESSASETEGLERDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAIKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCALDIPTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAVRKHPNLPHLPSHHSNTLEASQDEGKNMVFCGSALSNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGQWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN* | 661 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0208 | 660 | CDD | BRCT_Bard1_rpt1 | 440 | 518 | - | - | |
| Vra3g0208 | 660 | Gene3D | BRCT domain | 548 | 653 | IPR036420 | - | |
| Vra3g0208 | 660 | SUPERFAMILY | BRCT domain | 550 | 658 | IPR036420 | - | |
| Vra3g0208 | 660 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 398 | IPR013083 | - | |
| Vra3g0208 | 660 | MobiDBLite | consensus disorder prediction | 184 | 272 | - | - | |
| Vra3g0208 | 660 | PANTHER | BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 | 5 | 658 | - | - | |
| Vra3g0208 | 660 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 548 | 657 | IPR001357 | - | |
| Vra3g0208 | 660 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 103 | IPR013083 | - | |
| Vra3g0208 | 660 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 5 | 658 | IPR031099 | GO:0006281|GO:0006974 | |
| Vra3g0208 | 660 | SUPERFAMILY | RING/U-box | 28 | 93 | - | - | |
| Vra3g0208 | 660 | MobiDBLite | consensus disorder prediction | 223 | 248 | - | - | |
| Vra3g0208 | 660 | ProSiteProfiles | BRCT domain profile. | 546 | 660 | IPR001357 | - | |
| Vra3g0208 | 660 | Pfam | Zinc finger, C3HC4 type (RING finger) | 28 | 75 | - | - | |
| Vra3g0208 | 660 | Pfam | BRCA1 C Terminus (BRCT) domain | 441 | 512 | IPR001357 | - | |
| Vra3g0208 | 660 | ProSiteProfiles | Zinc finger RING-type profile. | 31 | 71 | IPR001841 | - | |
| Vra3g0208 | 660 | SUPERFAMILY | BRCT domain | 439 | 526 | IPR036420 | - | |
| Vra3g0208 | 660 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 276 | 396 | IPR034732 | - | |
| Vra3g0208 | 660 | ProSitePatterns | Zinc finger RING-type signature. | 46 | 55 | IPR017907 | - | |
| Vra3g0208 | 660 | SMART | ring_2 | 349 | 395 | IPR001841 | - | |
| Vra3g0208 | 660 | SMART | ring_2 | 31 | 70 | IPR001841 | - | |
| Vra3g0208 | 660 | MobiDBLite | consensus disorder prediction | 249 | 264 | - | - | |
| Vra3g0208 | 660 | SMART | BRCT_7 | 431 | 515 | IPR001357 | - | |
| Vra3g0208 | 660 | SMART | BRCT_7 | 548 | 653 | IPR001357 | - | |
| Vra3g0208 | 660 | Pfam | PHD-like zinc-binding domain | 317 | 395 | - | - | |
| Vra3g0208 | 660 | Gene3D | BRCT domain | 436 | 541 | IPR036420 | - | |
| Vra3g0208 | 660 | CDD | ePHD | 316 | 395 | - | - | |
| Vra3g0208 | 660 | ProSiteProfiles | BRCT domain profile. | 435 | 525 | IPR001357 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra3g0208 | Vra-Chr3 | 2400664 | 2404578 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra3g0208 | 469 | 582 | Core DNA Replication Machinery Family | AT4G02110 | 28.571 | 2.42e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0208 | K10683 | - | gmx:100784883 | 1100.5 |
Event-related genes