Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0205 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCAGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTGAAAGGTGAGGATGAAACGGTTCCTTCCTCGGAATCTCTTGGAATCAGGGAATTTTATTCATCAACGGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTAGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAGCACTCCTATTATTATGCTACTCCCCCAATGTCCATGTACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAACTAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTATAGTTATTCTGGACACAGTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTTGGCAACGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAACTTGCTGATTCTCCCCGTGATGTCATTTTGTCTTACCGGCGTGCACTCCTACACAAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCTCTATCTGTTTCAGGGGACTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGATACCAGGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGGAAATGTAATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGTATTTCTAATTCTGAGAGGGTTGAGAAACAAACCGAGGCACTACATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTAATATACAGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCTGCTCAGAAACAGTTTTTAGATGCTGAATCTATCCTCAAGGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTACGAACAAAAGCTAAACTACAAATAGTGCAGGGCCAGTTAAAAACTGCCATTGAAACATATACTCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTTTACATAAGTCTGTCACGATGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACTATGTACGAAGCAAAGGGGGTTCACGAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTCCTTAGGAGGTGCAGTAATCGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATATAACGCTTCTGCATGGTATAATCTTGGCATTTTCCACAAGGACGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2181 0.4168 MGSRVKQGRRLQKMMKCLCVREPVKGEDETVPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSSKIDETELSLRESGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSYYYATPPMSMYTAGLLLEAIFLKTKCLQVLGRFKEAAQTCIVILDTVESSFPEGLPQNFGNEGKLQETLSKVVELLPDLWKLADSPRDVILSYRRALLHKWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGKCNQLEGLSSCLLGVSLSTHSKFCISNSERVEKQTEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLDAALHYAKCFLNLEAGSSVKGWLLLARILSAQKQFLDAESILKEALDQTGIWDQGELLRTKAKLQIVQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGVHEEALKAFRDALNIDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLEESAPVEPFR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0205 726 SUPERFAMILY TPR-like 436 556 IPR011990 GO:0005515
Vra3g0205 726 PANTHER PROTEIN NPG1 7 726 IPR043376 -
Vra3g0205 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Vra3g0205 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Vra3g0205 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Vra3g0205 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Vra3g0205 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Vra3g0205 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Vra3g0205 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Vra3g0205 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
Vra3g0205 726 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 726 - -
Vra3g0205 726 Gene3D Tetratricopeptide repeat domain 611 714 IPR011990 GO:0005515
Vra3g0205 726 Gene3D Tetratricopeptide repeat domain 122 610 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0205 Vra-Chr3 2376958 2381258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0205 15 726 Calmodulin-binding Proteins AT4G28600 54.333 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0205 K21843 - gmx:100784353 1239.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0205 3 2376958 2381258 Vra3g0205 3 2376958 2381258 ECH
Vra8g0922 8 20498902 20504825 Vra3g0205 3 2376958 2381258 PCT