Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0197 ATGGATTCTGCAAGGAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCTCTACTAGAAAGAAAGACGATACTCATGGTGGGAATGAAGCTCCAAACGTGCCTCTGGACGAAGCAGCACTTTCCAATATCACAAAGCAGAAGGTTGCCGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAGATGAAGAACCTTCAGGAAAGGAAAGAACGTCGAACCATCTTGGAAAAGAAGTTGGCAGATGCTGATGTATCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAGATGGGTGTAGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGACTACAGATCATGTATTTGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGAGGAGTATTTATATCTTATTATGGAGTATCTACCTGGTGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTAGCCATTGAATCAATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTTGATAAATATGGACACTTGAGACTGTCAGATTTTGGGTTATGTAAACCATTAGACTGTAGTACACTTGAAGAGACGGATTTTTCTGCTGGTCAAAATGCAAATGGATTTCCTCAAAGTGATGAATCTGGACGCACACAACAAGAACAATTGCAACACTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACCGTCGGTACACCAGACTATATTGCTCCAGAAGTTCTATTAAAGAAAGGCTACGGGATGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCTGACGATCCAATGTCAACATGTAGAAAGATAGTAAATTGGAAATCTCATTTAAAGTTTCCTGAAGAAGCAAGGTTATCTGTAGAGGCTAAAGATCTTATCAGTAAGCTTTTATGTAATGTGAACCAGAGACTGGGCTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTTTTCAATGGTGTTGAGTGGGAAAGATTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAACGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACCACCAGACTCAATCAGCATCAAGAACTGGCGGTCCATGGAGAAAGATGCTTTCATCTAAAGACTTGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGACTGAATTAAGAAAGAAAACTTCTAAAGTAAAGAAGCCATCTGTCAAGTCTCTCTTTGATTGTGATTCTGATACATCTGAAGCATCTGCATCTGAGGCTTCTGATTCAACTGCGAGCACAACTAAAAGGATTGATGATCAACATACTCATTCAGAATAG 1638 0.3822 MDSARSWLQKFQPRDKLRASTRKKDDTHGGNEAPNVPLDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSAGQNANGFPQSDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSVEAKDLISKLLCNVNQRLGSNGADEIKAHPFFNGVEWERLYQMEAAFIPEVNDELDTQNFEKFDESDHQTQSASRTGGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKTSKVKKPSVKSLFDCDSDTSEASASEASDSTASTTKRIDDQHTHSE* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0197 545 SUPERFAMILY Protein kinase-like (PK-like) 93 460 IPR011009 -
Vra3g0197 545 CDD STKc_NDR_like 118 480 - -
Vra3g0197 545 Pfam Protein kinase domain 121 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0197 545 Coils Coil 62 82 - -
Vra3g0197 545 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Vra3g0197 545 MobiDBLite consensus disorder prediction 512 531 - -
Vra3g0197 545 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra3g0197 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra3g0197 545 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 23 526 - -
Vra3g0197 545 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0197 545 Gene3D Transferase(Phosphotransferase) domain 1 204 278 - -
Vra3g0197 545 Gene3D Transferase(Phosphotransferase) domain 1 308 435 - -
Vra3g0197 545 MobiDBLite consensus disorder prediction 511 545 - -
Vra3g0197 545 Pfam Protein kinase C terminal domain 434 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra3g0197 545 MobiDBLite consensus disorder prediction 9 30 - -
Vra3g0197 545 MobiDBLite consensus disorder prediction 279 299 - -
Vra3g0197 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vra3g0197 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 526 - -
Vra3g0197 545 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0197 545 MobiDBLite consensus disorder prediction 1 39 - -
Vra3g0197 545 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0197 Vra-Chr3 2303454 2308149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0197 1 509 AGC Kinase Gene Family AT1G03920 78.828 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra3g0197 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0197 K08790 - gmx:100783286 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0197 3 2303454 2308149 Vra3g0197 3 2303454 2308149 ECH
Vra3g0197 3 2303454 2308149 Vra8g0069 8 744186 754045 PCT