Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0193 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGCTTTTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTCAAGGGTACCTTGGTCGAAATCGACCTCCATATATGTGAACCATGGCAACTTCCAGAGGTGGCGAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACTTCTGGGTATTGGAAAGCAACAGGAAAGGATCGAACGGTGGTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACTGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAACAGTTCGAAACTCATGTACGATTATGATACAACCATGGCGTCGTCATCTCCCACCATGAACAGGTTTTCCACCTCTTTCCCTTCCTCCATGCCATTGCCAAGCAACCACCACCATCATCACCATTTCAACACAAACCAAAACTCTTCTTTCATGGACCTTCTTCACTTCTCTCGAGACACCAACACCAACAACACCATCGTTACTCAAATTACTTCCAAAGGTGATGATGGATATGGTTTCCTATGGGACATGGATTTGGAAGAAAATAGCTTACAGGATGCCGTGGCTTCAAACTTGGATGCAATAACCTTCGAGGTTGATAACAATAATAACAGTGAAAATAATATGGTATTCCTATAG 846 0.4645 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSSKLMYDYDTTMASSSPTMNRFSTSFPSSMPLPSNHHHHHHFNTNQNSSFMDLLHFSRDTNTNNTIVTQITSKGDDGYGFLWDMDLEENSLQDAVASNLDAITFEVDNNNNSENNMVFL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0193 281 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vra3g0193 281 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vra3g0193 281 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 271 - -
Vra3g0193 281 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vra3g0193 281 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vra3g0193 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0193 Vra-Chr3 2244586 2249449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0193 6 200 NAC Transcription Factor Family AT1G56010 51.185 9.65e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra3g0193 NAM 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0193 - - gmx:100806284 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0193 3 2244586 2249449 Vra3g0193 3 2244586 2249449 ECH