Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0192 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTCCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGGGTGGAAATGTTAAGAAAAATGATAAATCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCTGAGCGACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATGCGTGGGTGTCCTAGTTGCATTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGACGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTACATATATTGCAAGTCTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACGTATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACACCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAAACAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCACCCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAATATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAGTATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTATAGTTTCTGATCCTGTGGCAGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCAGGTTCCCTTCTTTCATTTGAAAGCCCTGACGTTTCATGTAACCTAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTAGGGTATATCATTCAGGATTTTATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGCCAGAACGCTGTAGACCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCACAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAACAAAAGCTTTCAATACTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACCAGTTCATTAGTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGTAGTATTTGCCTGTGTGATTTACACTTGTCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTTTCTTCTACCGTTATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGACGGGAAATTAAGTGCAGTATTTAAATGGGCCAAAGAGTATCTTGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAACCACGCTCAGAAAACGTTGGTGGTTCAACCTTCCCTGCCCAAGACTTGCATACGAAAAAATCTATATCCCAGACAGCAGCAAATAAATCAAAAGAGAAACCACTTCAATTGCAGGAAATATTGAATGCATCAAAGACAAAACAAAATGAAGAGGTTTCCCAGGTCTCACAGACTTCTGGTGACACTCACAGATCATATGGCACTCATTCAAAAACGAAGACAGATTTGCTTCAGTCAAGCTGTGCAAGTGGTACGAAAGGAATGAGTTCTGTTGGCACCAAAGTAGATACGGAGATGGATGGGAGTAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGTTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAA 2388 0.3991 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKGGNVKKNDKSTAFPVASEQEPNCMKTELETNDIDAYRQGLIRRPWINMDLSDNHKPKESHTKHLPMNLPINPSRPKGTMRGCPSCINCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASLRSKAETYGICRIVPPTCWKPPCFLQREHVWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKNKRKRDVEVALGSQLCKRNTSTPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSNIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPIVSDPVAANAYPEYLKSGWNLNNILSGSLLSFESPDVSCNLDPNVSVGMCFSAVNWEMQLSCSILKAEGIPVYRCVQYPREFVLVFPRVYHSGFYCGFNCSESVSFAPLEWLLHGQNAVDLYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLTKAFNTRIQSEILKRKFLTSSLVSQRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISELNVLRQALDGKLSAVFKWAKEYLGLTLNSAASKRSKPRSENVGGSTFPAQDLHTKKSISQTAANKSKEKPLQLQEILNASKTKQNEEVSQVSQTSGDTHRSYGTHSKTKTDLLQSSCASGTKGMSSVGTKVDTEMDGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0192 795 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Vra3g0192 795 Gene3D Cupin 404 497 - -
Vra3g0192 795 SMART cupin_9 358 468 IPR003347 -
Vra3g0192 795 SMART JmjN_1 140 181 IPR003349 -
Vra3g0192 795 Pfam JmjC domain, hydroxylase 401 451 IPR003347 -
Vra3g0192 795 MobiDBLite consensus disorder prediction 641 739 - -
Vra3g0192 795 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 81 403 - -
Vra3g0192 795 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 403 704 - -
Vra3g0192 795 SUPERFAMILY Clavaminate synthase-like 265 494 - -
Vra3g0192 795 Pfam C5HC2 zinc finger 559 609 IPR004198 -
Vra3g0192 795 ProSiteProfiles JmjC domain profile. 302 468 IPR003347 -
Vra3g0192 795 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 403 - -
Vra3g0192 795 PANTHER LYSINE-SPECIFIC DEMETHYLASE 403 704 - -
Vra3g0192 795 Pfam jmjN domain 142 175 IPR003349 -
Vra3g0192 795 Gene3D Cupin 126 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0192 Vra-Chr3 2230060 2237154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0192 15 686 JUMONJI Transcription Factor Family AT2G38950 36.253 2.04e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra3g0192 zf-C5HC2 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0192 - - gmx:100804864 591.267