Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0186 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCATGAAGAAGATCAAATTCTCATCAATTACATCAACATTTATGGCCATGCTAATTGGCGTGCTCTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGCTGTAGACTCCGGTGGATAAATTATCTCAGGCCAGACATCAAACGGGGCAACTTCACCCCAGAAGAAGAGGATGCTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCAAGAGCAACAACGAAGCAAAAAACAACCAAAGTTGGATGGGGATGCTTCCAAAACCAATTACCAAGACGCCAAACTAGACCCCGTGAATAACGTTCACCTTCATGCATCAACCAAAGAAGATAATAGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGATATGTCTTCGCTCACCAATAGTGACAACAATAGCAGCATTAATAATAATAATAATTGTGACATGTCCTCGCATGTTAATGATATTGACACACCGGAGAACAATCTTGCACTGGACGAGGATTTCTGGTCGGAAGTATTGTTATCTGACGATAGTTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGATTTGAACCAATGTCTAACGAAGAAGTAGGGGTGCTTATAGATGGGAGTTCGTCAAGTATGAGCGATGGCATGGACTTTTGGTGCAACGTTTACGCCAGAGCTGAGGAATTCAACCAGTTACTTGAATTATGA 867 0.4406 MGRAPCCEKMGLKRGPWTHEEDQILINYINIYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTPEEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSQEQQRSKKQPKLDGDASKTNYQDAKLDPVNNVHLHASTKEDNSTEDMPLSPPQCSSDMSSLTNSDNNSSINNNNNCDMSSHVNDIDTPENNLALDEDFWSEVLLSDDSSGETSGFPSIDYGRFEPMSNEEVGVLIDGSSSSMSDGMDFWCNVYARAEEFNQLLEL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0186 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra3g0186 288 CDD SANT 69 112 IPR001005 -
Vra3g0186 288 Gene3D - 69 141 - -
Vra3g0186 288 MobiDBLite consensus disorder prediction 166 198 - -
Vra3g0186 288 CDD SANT 16 61 IPR001005 -
Vra3g0186 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra3g0186 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g0186 288 SMART sant 66 114 IPR001005 -
Vra3g0186 288 SMART sant 13 63 IPR001005 -
Vra3g0186 288 MobiDBLite consensus disorder prediction 127 143 - -
Vra3g0186 288 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vra3g0186 288 MobiDBLite consensus disorder prediction 112 198 - -
Vra3g0186 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra3g0186 288 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
Vra3g0186 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra3g0186 288 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 281 - -
Vra3g0186 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g0186 288 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0186 Vra-Chr3 2164911 2167028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0186 1 288 MYB Transcription Factor Family AT2G31180 47.766 1.74e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0186 Myb_DNA-binding 9.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0186 K09422 - gmx:100775603 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0186 3 2164911 2167028 Vra3g0186 3 2164911 2167028 ECH
Vra3g0186 3 2164911 2167028 Vra8g0079 8 857494 860007 PCT