Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0183 ATGGCAAAGGAGCAAATTCAGGTACTAAATGCGCTTGATGTTGCAAAAACGCAATGGTACCATTTCACAGCAATCGTCATCGCTGGAATGGGCTTCTTCACCGATGCATATGATCTATTTTGCATATCCCTTGTTACAAAGTTGCTTGGCCGCATATATTACCATGTTGACGGTTCACCAAAGCCCGGTTCATTGCCTCCCAATGTTGCAGCTGCTGTAAATGGTGTGGCTTTCTGTGGAACACTTTCAGGACAGCTTTTCTTTGGTTGGCTTGGTGATAAGATGGGAAGGAAAAAAGTCTATGGCATGACTCTGATGATGATGGTGATATGTTCCGTGGGTTCCGGCCTTTCATTCGGTCATAGTGCAAAATCTGTAATGGCAACCCTCTGCTTCTTCCGGTTCTGGCTTGGATTTGGCATTGGTGGAGACTATCCACTTTCTGCCACCATAATGTCTGAGTATTCAAACAAGAAGACTCGCGGGGCCTTCATTGCTGCAGTGTTTGCCATGCAGGGTTTTGGCATTTTGGCAGGTGGTATATTTGCAATTATAGTTTCAGCTTCATTCAATAGCAGGTATACTGCTCCAGCATATGAGGTTGATCCAGCCGGGTCAACAGTCGTACAAGCAGACTACATTTGGAGGATAATTGTGATGGTGGGAGCACTCCCAGCGGCATTGACTTACTACTGGCGGATGAAGATGCCGGAAACTGCCCGTTATACTGCTCTAGTAGCCAAGAACATGAAGCAGGCAGCAGCAGATATGTCTAAGGTTCTGCAGGTCGAGATTCAAGCTGAACCACAGAGTGAAGATCCGGCAAAGCCCAAGCCATATGGCTTGTTCTCAAAGGAGTTCCTCACTCGCCATGGACTGCATCTGCTTGGTACATCAAGCACTTGGTTCTTGCTTGATATTGCGTTTTACAGTCAAAATCTTTTCCAGAAGGACATCTTCAGTGCAATTGGTTGGATACCTCCAGCCAAAACCATGAATGCTATTGAGGAGGTTTACAAAATTGCAAGGGCTCAAACACTCATTGCTCTCTGCAGTACAGTTCCTGGCTACTGGTTCACGGTGGCTTTCATTGACAAGATAGGAAGATTTGCCATCCAATTGATGGGCTTCTTCTTCATGACTGTCTTCATGTTTGCTCTTGCCATCCCCTATGACCACTGGACTCATAAGGATAACCGGATAGGATTTGTGGTGATGTATTCATTGACCTTTTTCTTTGCAAACTTTGGGCCCAATGCTACCACTTTTGTGGTGCCAGCAGAGATTTTCCCTGCTAGATTCCGAAGTACTTGTCATGGAATTTCATCAGCATCTGGAAAGCTTGGGGCTATTGTTGGTTCCTTTGGGTTCTTGTACTTGGCACAAAACAAGGACAAAAGCAAAGCTGATGCAGGGTACCCTGCAGGTATTGGTGTAAAGAATTCACTTATAGTTTTAGGTGTAGTTAACATTCTAGGCTTCTTCTTCACTTTCTTGGTTCCTGAGGCAAAGGGAAGATCGTTGGAGGAGATGTCAGGTGAGAATGAAGAGGATGTTGGAACCGGGGAAGAATCAGAACAATCACATCCTCACAACAACAAAACTGTTCCGTATGTTTAG 1620 0.4519 MAKEQIQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSPKPGSLPPNVAAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMMMVICSVGSGLSFGHSAKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILAGGIFAIIVSASFNSRYTAPAYEVDPAGSTVVQADYIWRIIVMVGALPAALTYYWRMKMPETARYTALVAKNMKQAAADMSKVLQVEIQAEPQSEDPAKPKPYGLFSKEFLTRHGLHLLGTSSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVAFIDKIGRFAIQLMGFFFMTVFMFALAIPYDHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGSFGFLYLAQNKDKSKADAGYPAGIGVKNSLIVLGVVNILGFFFTFLVPEAKGRSLEEMSGENEEDVGTGEESEQSHPHNNKTVPYV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0183 539 Pfam Sugar (and other) transporter 25 512 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra3g0183 539 MobiDBLite consensus disorder prediction 509 539 - -
Vra3g0183 539 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 522 - -
Vra3g0183 539 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 505 IPR020846 GO:0022857
Vra3g0183 539 TIGRFAM 2A0109: phosphate:H+ symporter 11 514 IPR004738 GO:0005315|GO:0006817|GO:0016021
Vra3g0183 539 CDD MFS_PhT 25 504 - -
Vra3g0183 539 Gene3D MFS general substrate transporter like domains 20 529 IPR036259 -
Vra3g0183 539 SUPERFAMILY MFS general substrate transporter 12 512 IPR036259 -
Vra3g0183 539 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0183 Vra-Chr3 2133115 2136366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0183 1 518 Inorganic Solute Cotransporters AT3G54700 84.200 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0183 K08176 - gmx:100819445 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0183 3 2133115 2136366 Vra3g0183 3 2133115 2136366 ECH
Vra3g0183 3 2133115 2136366 Vra8g0081 8 878756 881455 PCT