Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0182 ATGGATTTGCCTTTGGATTTAGATTTTGATTATCATCTTTTTCCAAACCAAAACCTTAACTTTTTCGAAAACGCTGGCGACCCTTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGCGACGACCAAACCAAGGAATCATCTTCGGCGTCCAACGTTTCCGCTTCTGTGGGAAGCCTTGAGTTACAGGAAGTATCGTCCGACAACACAGCCTACGAAGAAGTGTCGAAAATAACGGAGCCAGTGGCGGCGCCGGCGCCGGCTAAGGAGGGTAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCCGAGATAAGGGATTCGACTCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTACGACCAGGCGGCGTTCTCGACGAGGGGATCTTTAGCGGTGCTGAATTTCCCGGTGGAAGTGGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCCCTCAAGAGAAAACACACTATGAGGAAAAAGTCCAGTTCGAAGAAGAAGAAAAGCAAAAGCGATGGCAGGGAGCAGTTAGAATTCTGCACCACTTCGCAGAATGTGCTGGTGTTCGAGGATTTGGGTGCTGAGTATCTAGAACAGCTTTTGAGTTTGACTTATTAG 699 0.5064 MDLPLDLDFDYHLFPNQNLNFFENAGDPFSWDYNFDDIFNFSDDQTKESSSASNVSASVGSLELQEVSSDNTAYEEVSKITEPVAAPAPAKEGRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPVEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRKKSSSKKKKSKSDGREQLEFCTTSQNVLVFEDLGAEYLEQLLSLTY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0182 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 229 - -
Vra3g0182 232 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vra3g0182 232 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vra3g0182 232 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Vra3g0182 232 MobiDBLite consensus disorder prediction 182 202 - -
Vra3g0182 232 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Vra3g0182 232 SUPERFAMILY DNA-binding domain 95 155 IPR016177 GO:0003677
Vra3g0182 232 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700|GO:0006355
Vra3g0182 232 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Vra3g0182 232 PANTHER DNA-BINDING DOMAIN 31 229 IPR044808 GO:0003700|GO:0009873
Vra3g0182 232 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0182 Vra-Chr3 2102767 2103879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0182 92 228 AP2-EREBP Transcription Factor Family AT2G31230 58.228 1.85e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra3g0182 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0182 K14516 - gmx:100779524 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0182 3 2102767 2103879 Vra3g0182 3 2102767 2103879 ECH