Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0181 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACGCTTCAAACGCAGAGGTGAGGTACAGAGGGATTCGTAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGTGCTCGAATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGTGCTTACGATGCTGCTGCTTTTCGTTTTCGGGGTCACAAGGCCATCCTCAACTTCCCTAACGAGTATGGCCACACCACTCCTAATCCTAACATGTTTTCAAATTCACAGCCTCTTAATTCTTCTTCTTCTTTTCCTTCGTACTCTGGTGGCGAGGGTTCTTCACAACAACAGCGAAATGGTGCTGCAACTTTTGAATTGGAATACTTGGACAATAAGTTGTTGGAAGAACTCCTTGAGACGCCTGATGGAACAGGCAACGACTACAATTAA 441 0.4671 MEGGRGVVNGNASNAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFRFRGHKAILNFPNEYGHTTPNPNMFSNSQPLNSSSSFPSYSGGEGSSQQQRNGAATFELEYLDNKLLEELLETPDGTGNDYN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0181 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vra3g0181 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vra3g0181 146 PANTHER DNA-BINDING DOMAIN 13 100 IPR044808 GO:0003700|GO:0009873
Vra3g0181 146 MobiDBLite consensus disorder prediction 76 119 - -
Vra3g0181 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vra3g0181 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vra3g0181 146 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vra3g0181 146 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Vra3g0181 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 13 100 - -
Vra3g0181 146 MobiDBLite consensus disorder prediction 78 119 - -
Vra3g0181 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vra3g0181 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0181 Vra-Chr3 2089511 2090150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0181 13 137 AP2-EREBP Transcription Factor Family AT3G23230 58.400 3.69e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0181 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0181 - - vun:114173094 228.409