Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0180 ATGGGTTCCCCTTTCTTTCAGCATTCAGATTGGGGGACGTTGAAGGAGACAGGTGATATTCTGTTTGAACCATTTTCAAGCAAAGATATTTGTTGTGACCCTTTCCATGACTATCTTTCCTTTGATATGATTGAGCACTCAAGGGATCCACAGGAACCGAGTGAAGTGATTGAAGCTGTGGAAGTGGTGCAAAGTAATAAGCAGTGTTATATTGGGGTAAGGAGAAGAGCGTCGGGAAGGTTTGCGGCGGAGATCAGAGACGCCACGAGGAAAGGTACCAGAGTTTGGCTTGGAACGTTTTCTAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTCTCATGAGAGGATCATGTGCACTGCTGAATTTTCCTGTCAAAAGGGTTATAGAGTCTTTACATCAACTCAATTACTTTGCTTGCAACCAAGCCTGCTCTCCGGCATTGGAACTCAAAAACAGGCACAACATGCGACGAAAATTATCGTCAAAGGCTAAGGAAACTAAAACCTAG 519 0.4393 MGSPFFQHSDWGTLKETGDILFEPFSSKDICCDPFHDYLSFDMIEHSRDPQEPSEVIEAVEVVQSNKQCYIGVRRRASGRFAAEIRDATRKGTRVWLGTFSNAEEAALAYDQAAFLMRGSCALLNFPVKRVIESLHQLNYFACNQACSPALELKNRHNMRRKLSSKAKETKT* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0180 172 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 54 169 - -
Vra3g0180 172 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 PANTHER DNA-BINDING DOMAIN 54 169 IPR044808 GO:0003700|GO:0009873
Vra3g0180 172 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Vra3g0180 172 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Vra3g0180 172 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0180 Vra-Chr3 2076541 2077059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0180 57 166 AP2-EREBP Transcription Factor Family AT3G23240 59.091 6.21e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra3g0180 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0180 K14516 - gmx:100800600 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0180 3 2076541 2077059 Vra3g0180 3 2076541 2077059 ECH