Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0179 ATGGATTTTAATTCTTCGTTTTCACACCAAAGTCTAGAATCCCATCTCAACTCTTGGGAAGCGTTGTTTTCGTTCAACAACAATGCAACAAATGAATCGTCCTTATCGTTACAAGAGCAGACCTCTGATATCACAGACGATGGTTCAAACCCACAGACGAAGAAAGAGAGGAGACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTTGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCGGCACAAGTGGTTGTGGAGTCCCTCCAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTGAAAAGGATGCACGTGATGAGAACGAAATCTAGAGCTAGCAGGGTTAAAAGGGGTTGCAGCAAATTGAAACCGGATCCTACCGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGCTGCTGA 597 0.4489 MDFNSSFSHQSLESHLNSWEALFSFNNNATNESSLSLQEQTSDITDDGSNPQTKKERRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVVVESLQDMGFKALRNGVSPLLELKRMHVMRTKSRASRVKRGCSKLKPDPTAETVLVLEDLGPEYLEQLLTFTSPGSCC* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0179 198 CDD AP2 67 116 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Vra3g0179 198 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Vra3g0179 198 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 MobiDBLite consensus disorder prediction 34 63 - -
Vra3g0179 198 MobiDBLite consensus disorder prediction 34 48 - -
Vra3g0179 198 PANTHER DNA-BINDING DOMAIN 52 192 IPR044808 GO:0003700|GO:0009873
Vra3g0179 198 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 Pfam AP2 domain 60 105 IPR001471 GO:0003700|GO:0006355
Vra3g0179 198 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 52 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0179 Vra-Chr3 2067468 2068198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0179 25 189 AP2-EREBP Transcription Factor Family AT3G23240 49.721 3.31e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0179 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0179 K14516 - gmx:100818907 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0179 3 2067468 2068198 Vra3g0179 3 2067468 2068198 ECH
Vra3g0179 3 2067468 2068198 Vra8g0083 8 900907 901581 PCT