Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0178 ATGGAGGAGTTAAAGGAAAAGGTGAGTGAAAAGGAAACAGAGAAAATAAAGTACAGAGGAGTAAGAAGGAGGCCATGGGGAAAATATGCAGCAGAGATTAGAGATTCAGCTAGAAATGGAGCTCGGGTGTGGCTTGGGACCTTTAACACTGCTGAGGAAGCAGCAAGAGCTTATGATCGAGCTGCCTTTGAAATGAGAGGTGCTATGGCCATTCTGAACTTCCCACATGAACATCCTCCTTTTACTTCATCATCTAAAACTGAACATGCTAAACAAGTTGTGGTATTTGAGTGTCTCGATGACAAATTGTTGGAGGAACTCCTTGATTGTGATCACAAAAACATGAATCACAACTTCGCCAACTAG 366 0.4235 MEELKEKVSEKETEKIKYRGVRRRPWGKYAAEIRDSARNGARVWLGTFNTAEEAARAYDRAAFEMRGAMAILNFPHEHPPFTSSSKTEHAKQVVVFECLDDKLLEELLDCDHKNMNHNFAN* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0178 121 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Vra3g0178 121 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vra3g0178 121 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 7 88 - -
Vra3g0178 121 Coils Coil 1 21 - -
Vra3g0178 121 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vra3g0178 121 PANTHER DNA-BINDING DOMAIN 7 88 IPR044808 GO:0003700|GO:0009873
Vra3g0178 121 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Vra3g0178 121 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vra3g0178 121 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vra3g0178 121 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vra3g0178 121 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0178 Vra-Chr3 2056639 2057934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0178 12 113 AP2-EREBP Transcription Factor Family AT3G23230 54.032 5.79e-40 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0178 AP2 2.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0178 - - gmx:100800069 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0178 3 2056639 2057934 Vra3g0178 3 2056639 2057934 ECH
Vra3g0178 3 2056639 2057934 Vra8g0458 8 6182035 6183151 PCT