Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0177 ATGGCACTCAACCCCAACCCCTCTTACAAGCTGCTTCCACCCATCAAAATTCATGCTAGCACAATCCTTCACAAATCAAAACCTCCTTCAAATTCTGCTTCTGCTTTACCCATACTTGCCATCATAGTTCCCACTATCTTTGTCACTGTTTTTATACTCATCACCTACTTAACTCTTGTCACCAAATGCTTCTCAAACTTGTACCTATTTCACCCCTTGAGATGGTTTTTCTCCCTCCTTACCCCTCAACATGAAGATCAAGACCCCTTCATACCACTCTCTCCCAGGATGTGGAGCCAAGGACTTGATGAAACTGCAATCGGAGAAATCCCAACACTTCAATTCACAAAAGGAGATGTTGAAAAGAATCATCAAAGTGTGTATGGCTGCGTGATTTGTTTGACTGAGTTTCAAGATCATGATATGCTGAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATTGACATTTGGCTTCAAACCAGTTCCAATTGCCCTCTTTGTAGATCAAGCATTGTATCAGGCAACGCACACTGTCCAACGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTTACGTGGACAGTGATGAAGATTTTGTTGTCATTGAACTTGAGAGAGAACATGAAGAAGCACTGCCACAGATGACGCAACAAGAAAGAAGTGACCCAAGGGAAAGAGTTGTAGAGAGTAGAAGTCACTCTATTATAAGGAAGTGTCACCACGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTATTCTGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCAAGTTTACTTCGATTTTCAAACCATCATGCAACAGAATAATAGGCATCTAAAATCAGGCTAG 909 0.4158 MALNPNPSYKLLPPIKIHASTILHKSKPPSNSASALPILAIIVPTIFVTVFILITYLTLVTKCFSNLYLFHPLRWFFSLLTPQHEDQDPFIPLSPRMWSQGLDETAIGEIPTLQFTKGDVEKNHQSVYGCVICLTEFQDHDMLKVLPICKHAFHFHCIDIWLQTSSNCPLCRSSIVSGNAHCPTDHIIAPSSSPQDSYVDSDEDFVVIELEREHEEALPQMTQQERSDPRERVVESRSHSIIRKCHHVSIMGDECIDVRKKDEQFSILPIRRSFSMDSANDRQVYFDFQTIMQQNNRHLKSG* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0177 302 Pfam Ring finger domain 130 172 IPR001841 -
Vra3g0177 302 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 23 298 - -
Vra3g0177 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Vra3g0177 302 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vra3g0177 302 CDD RING-H2_PA-TM-RING 130 172 - -
Vra3g0177 302 SMART ring_2 130 171 IPR001841 -
Vra3g0177 302 PANTHER RING-H2 FINGER PROTEIN ATL16 23 298 IPR044600 GO:0016567|GO:0016740
Vra3g0177 302 SUPERFAMILY RING/U-box 111 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0177 Vra-Chr3 2052786 2053875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0177 30 299 C3H Transcription Factor Family AT1G04360 38.961 2.60e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0177 K19041 - gmx:100809883 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0177 3 2052786 2053875 Vra3g0177 3 2052786 2053875 ECH
Vra3g0177 3 2052786 2053875 Vra8g0087 8 931570 933127 PCT