Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0175 ATGGGTAACAACTTGCACCAAGTACTCAGAAGCCTCTGTTTTAATACTCACTGGAACTACGCTATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGACGCATACTATAACAATCCTGATGATTATGACTCTTCAGAAAATAAGCACTGCCAGAATATCTTGGAACAGATTAGTTATGGGAAATTTTCGCACAACGCATTAGGGTTAGCAGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGTATTGTTGGACAGGTTGCTGTTACAGGAAAGCATAGGTGGATCTGTGCAGATAATCAGGTTGCAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGCCCCACTTGGTGTTGTTCAGCTAGGTTCTCTCAATAAAGTGATTGAAGATACGGGGTTTGTAGCTCATATCAGAAATCTCTTTCAAAATTGCTCAATGGCCCAATGTCCTAGTCAAATACAGGGCAGTTTGAAGAGTTCTTTATCTCAGTTGGATATATCGAAGGAAAATTTGTCTTCAGATGTAATGCCGACTGGCTTTTACAATCCACAGAAATCTATGAAGAGTGAAACAGCAGATGTTTTAATGTCCCTTCAATGTTCTGGGAGGAACTATGCACTTCATTCTGCTTGTCAGAAAATGACTGATAACGTGGCCAAGCAGGAGGGGCCTGAATTGTACAGTGATGAAAGTTCCATTTTGCTTCAGTCAATATCCAATATGATGAATGTGGAGCATCATGATTTTGAAGAGATGAAAGCTCTGTATGGGAGGAAGTGTGAAGAAGGAAGTAGTGGTTGCAAAGATTTGAGGTTGGAATCAGAAAACAATGTCTCGTCATTTTTAAGTGACTTTATTACAGATAATGATTTAATATGTCCATCAGAAAAATTCAGAGTTGATTCTGCATGTTTTCCCTCAGCTTTTCTTGATACAGTTGTTTGTGAAACTGATAAGTTGCATTGTGTGGATAATAACCAAAAGGGGGTGTTGAATTTCACCCAACCTTCAGATGCAAACTCCCAATATGTTGAAAAGTCGAAGTTTCATACTGAGCCTTCTTACAATGATATGTCAAATGTGTTGAATTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCATCTTTTCTGAAAGGGAGTAAAAGTTTTGATTGGGCAGCACAGTTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACTAGCCAATTGACTTCTGAATCTCGTCCAGAGCATCTTTTGGAAGCACTGGTGGCCAACATTTGCCATAGTAATAATGATGTTAATAGTGAATTATCGTTTTGTACATCAATGCAATCTGCAATGGCCTCGGGAAAAAATCATGAAGCTTCCACTCACAATGTGTATGCTATTAATTCAGAAGGTTATTCAATAGATCAGTTCTCTCTTGTCAAAGAGGACAAACACCATTCTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCCAAAGGTGTTTCATCTACATTCCCTAGTTCAAGTAGTGGACAACTTGAAAGGTCGTCTGAACCATCTAAGAATAGCAAAAAGAGGGCCAGGCCTGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAATTAATCCAAGATCGTATTAAGGAGTTGAGAGAGTTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCCCTGCTGGAGCGAGCCATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGCTAACTGACTTTGGTGATACAAAGTCAAAGCTGCATCACATGGAAGCAGACATTATTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGCGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTTTGGGTCTTACCATTTTGAAAGGTGGAACTAAAGTTCATGGTGAAAAGATATGGATATGCTTTGTTGTCGAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAATACTGCAATCGAAGAGCACGGTGTATTCACAATAA 2211 0.4062 MGNNLHQVLRSLCFNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDYDSSENKHCQNILEQISYGKFSHNALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVAGSGLSFEFADGWQSQFSAGIRTIAVVAVAPLGVVQLGSLNKVIEDTGFVAHIRNLFQNCSMAQCPSQIQGSLKSSLSQLDISKENLSSDVMPTGFYNPQKSMKSETADVLMSLQCSGRNYALHSACQKMTDNVAKQEGPELYSDESSILLQSISNMMNVEHHDFEEMKALYGRKCEEGSSGCKDLRLESENNVSSFLSDFITDNDLICPSEKFRVDSACFPSAFLDTVVCETDKLHCVDNNQKGVLNFTQPSDANSQYVEKSKFHTEPSYNDMSNVLNFPAGCELHEALGPSFLKGSKSFDWAAQFNQDMKTVEMSDEISTSQLTSESRPEHLLEALVANICHSNNDVNSELSFCTSMQSAMASGKNHEASTHNVYAINSEGYSIDQFSLVKEDKHHSLSSSSGICGVMSSKGVSSTFPSSSSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFGDTKSKLHHMEADIIGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGGTKVHGEKIWICFVVEGQNNRNVHRLDILWPLVQILQSKSTVYSQ* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0175 736 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Vra3g0175 736 MobiDBLite consensus disorder prediction 541 565 - -
Vra3g0175 736 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 550 599 IPR011598 GO:0046983
Vra3g0175 736 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 563 604 IPR036638 GO:0046983
Vra3g0175 736 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 736 IPR043561 GO:0003700|GO:0006355
Vra3g0175 736 MobiDBLite consensus disorder prediction 526 540 - -
Vra3g0175 736 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 736 - -
Vra3g0175 736 MobiDBLite consensus disorder prediction 526 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0175 Vra-Chr3 2012020 2019650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0175 1 731 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.180 6.14e-153 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0175 - - ccaj:109796613 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0175 3 2012020 2019650 Vra3g0175 3 2012020 2019650 ECH