Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0173 ATGACTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTTCCTGTCAGTGACCGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCCCAGTATCTTCAGAGTTGGTTCCAGACGGACAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACTGATACTTCAACACAGTACTATGGAAATACTAATACCTTCATTGACCCAAACCCTATAGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTCCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACATGCAAAGGCAGTGGACCTTTTATCAAGTGGATAACCTTCAGTAA 651 0.4332 MTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATENPNEKYFGKSTNFPQYLQSWFQTDNSNSASQFLPKLSTDTSTQYYGNTNTFIDPNPIGNDDNSVTVEESISFSSFEESCNSMACDMQRQWTFYQVDNLQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0173 216 Coils Coil 85 105 - -
Vra3g0173 216 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Vra3g0173 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 204 - -
Vra3g0173 216 ProSiteProfiles LOB domain profile. 4 106 IPR004883 -
Vra3g0173 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0173 Vra-Chr3 1988507 1989614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0173 5 131 AS2 family AT3G58190 75.969 4.73e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra3g0173 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0173 K13945 K13944 gmx:100816960 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0173 3 1988507 1989614 Vra3g0173 3 1988507 1989614 ECH