Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0172 ATGGCTTCTGCAAGTGGAAATGCTGCCTCTAATGCCTCTGGCTCTCCTTGCGGGGCATGCAAATTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTCTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAATCTGATGGAGTCGAGGAGCATGGAGAATAATAATAATCAGTGGGCAGGGAATCAAAGTGTTGCAGGAGAAGCAATGAACCATCCGTTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAAGAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA 621 0.4734 MASASGNAASNASGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRSMENNNNQWAGNQSVAGEAMNHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSREERAYKNNELGELQELALRMMRN* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0172 206 Coils Coil 96 116 - -
Vra3g0172 206 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Vra3g0172 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 4 205 - -
Vra3g0172 206 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Vra3g0172 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0172 Vra-Chr3 1976803 1978634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0172 3 206 AS2 family AT2G42430 53.689 5.48e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra3g0172 LOB 7.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0172 K13944 - gmx:100801508 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0172 3 1976803 1978634 Vra3g0172 3 1976803 1978634 ECH