Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0169 ATGGACTTAAACTACCCAGAAGACTTCTACTCCAACATTGGAACTTCCAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAACAAAGGGCCAACAACAACACCAAATCCACTTTCTCTCCTCCTCCTACTCCTCCTACTCCTCCTTCAACTTCTAACAAAGTTGATGCAACCAACAACCATGCAGATCTCGTTCAAATTCCAACCCAATCTACTCCTTCTAATGCTAATACCTTCCCTCATCTTTCTTTTCCACCCACTTCACTCACTGTTACACCTTCCCATGCTGAGCTTTCCTGTGCAGAAAAAGACCAACTGGGTCACGTCTTTCTGCAGGATTGGAGTACCACCAATTTCAACTTCTACTCTAATCCATTGTGTTTTCATGAAATCAAGAATAAGTTTGAAGACACTGATGAGAATGGCCTGGATTTGGAGCTCAGGTTGGGTCATCATCCATAG 507 0.4379 MDLNYPEDFYSNIGTSRSYECIFCKRGFTTAQALGGHMNIHRKQRANNNTKSTFSPPPTPPTPPSTSNKVDATNNHADLVQIPTQSTPSNANTFPHLSFPPTSLTVTPSHAELSCAEKDQLGHVFLQDWSTTNFNFYSNPLCFHEIKNKFEDTDENGLDLELRLGHHP* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0169 168 Pfam C2H2-type zinc finger 19 44 - -
Vra3g0169 168 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vra3g0169 168 PANTHER OS07G0101800 PROTEIN 15 168 - -
Vra3g0169 168 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Vra3g0169 168 MobiDBLite consensus disorder prediction 47 72 - -
Vra3g0169 168 Gene3D Classic Zinc Finger 12 56 - -
Vra3g0169 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Vra3g0169 168 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0169 Vra-Chr3 1948290 1948796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0169 5 168 C2H2 Transcription Factor Family AT4G17810 29.121 1.20e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0169 - - gmx:102664910 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0169 3 1948290 1948796 Vra3g0169 3 1948290 1948796 ECH