Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0168 ATGGAAGGAAACTATCTGACCAGAAACACGGATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAATTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTATGCCAAACCCCACTCATCTTTCACCCTCCTCTCCATCCTCCTCTCTATCTAACACTAACCTTTTCAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTGTGTCGTTTTCACTGACCCCGCCAGTTTCTCTCAATGGAGACAAGAAACCAACACTCGCATCTTCCCAGTTTCTTACTCTTTCGGTTCCTCAGGAAAGTGAGGAAATTAAGATTTGTAAGAACAAAGAGATTGGTTTGGGAGTTGAAAAAGTACAGGGTTGTGCAATAGGAGAGGAATGCAAGGTTTGTAAGAGTAGTGAGCATAGCATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAGTTAGATTTGGAACTACGATTGGGACACTGA 633 0.4392 MEGNYLTRNTDKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIMPNPTHLSPSSPSSSLSNTNLFNCAHCSPLYSPSLTVSFSLTPPVSLNGDKKPTLASSQFLTLSVPQESEEIKICKNKEIGLGVEKVQGCAIGEECKVCKSSEHSIKLELGIGFLKQPEKLDLELRLGH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0168 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Vra3g0168 210 SMART c2h2final6 32 54 IPR013087 -
Vra3g0168 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vra3g0168 210 Pfam C2H2-type zinc finger 32 56 - -
Vra3g0168 210 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 20 210 - -
Vra3g0168 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vra3g0168 210 PANTHER OS07G0101800 PROTEIN 20 210 - -
Vra3g0168 210 Gene3D Classic Zinc Finger 21 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0168 Vra-Chr3 1940721 1941802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0168 19 209 C2H2 Transcription Factor Family AT3G23130 38.265 2.22e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0168 zf-C2H2_6 6.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0168 - - gmx:102660083 271.937