Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0161 ATGCCTGCCCACGCGCCTCCCATCAACAAACACTCTCCGCCGCCGCCCAAGGAGGCCCATTTCAGAGGCGTCCGCAAGCGTCCCTGGGGTCGCTTCGCCGCCGAGATCCGCGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACCGCAGCAAGAACGCTCCGAGGGCCCAAGGCCAAAACCAACTTCACCTACGTCGTTGCTCCTGCGGTTTTTGCTGCCCCTGAATCTCAGGCCCCGGCCCATGACCCACTCGCTAGACCGGTCGAGTTCTTCGGCCTTCCCTTGTTCTTCACCACGGATGCAGATTCCGGTGCGCCGGTGAGGTCGGAGTACAAGGGTTACAAGTTGGAAAACATTGCCGGTTTTGTGGTTACCAAGGAGGAGAAGAAGAAGCCGTTTTTGTTCGACCTTAATCAGCCGGCGCCGCTCTTCTGA 477 0.6017 MPAHAPPINKHSPPPPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPAVFAAPESQAPAHDPLARPVEFFGLPLFFTTDADSGAPVRSEYKGYKLENIAGFVVTKEEKKKPFLFDLNQPAPLF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0161 158 MobiDBLite consensus disorder prediction 1 24 - -
Vra3g0161 158 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vra3g0161 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 94 - -
Vra3g0161 158 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vra3g0161 158 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vra3g0161 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0161 Vra-Chr3 1825875 1827233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0161 17 76 AP2-EREBP Transcription Factor Family AT5G44210 88.333 4.84e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0161 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0161 K09286 - gmx:100816599 238.424