Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0159 ATGTCGAATCAGGTGGTGAAGGTGAGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGCTGTTCAGAGAAGCCACAACCATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACTGATGAGGAATTGGAAAGTTGTCCAATATGTGGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTGAGGGCCAAAGTTTTCCCCTTGAAGGGAAGAAAGGTGAAGGCACCTGAAATTGTGACCTCAATACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTGAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCCACTAGTTTTTCCTTTGAAAAGTCCATTAAAAAAGAGGAAGAATTACTGGAAGATCATCTTGAGAGTTCAAGCTCACCAGAAAATTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCTGCACCCAATAAAGGATCGGAGAATGGTGGCGAACCATGGGATGCAAAAATGGATCTTTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTTTGATGCTAAATTAGAAACCACTCAAGTAAGTGAGAGTGACTCTCAGATGCAGAAAACTAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGCCTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTGCTTGATTCTGCCAGTAGTAATAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTGGTAGCTTCAGAAAACCAGGGAGGAGATGCACCGTTGCCACAAATTCCTGCAAGTTATGTGAGAATCAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGCATGGGACAATCAGTGCTCCCCACATTGCGTCTATATAATTTGGTTGAGTTGTGGTTGGATACAGCATCGACGTCACAGAGAATTCCAGCAACTATTGGTTCATCAGCAAAGGATTTTGTCATGGTATTGGCTTATGCTCGGAAGGTTCCTCACCCATGA 1290 0.4318 MSNQVVKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELESCPICGIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVTSIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSFEKSIKKEEELLEDHLESSSSPENSNKFAQNSGQSMSPCEGSQSAPNKGSENGGEPWDAKMDLWKPLNCLVEVASRSKSFKSHVQGFDAKLETTQVSESDSQMQKTKNKENKRKAKVEDEKISPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSASSNRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVPHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0159 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vra3g0159 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Vra3g0159 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Vra3g0159 429 MobiDBLite consensus disorder prediction 166 198 - -
Vra3g0159 429 SUPERFAMILY RING/U-box 13 83 - -
Vra3g0159 429 MobiDBLite consensus disorder prediction 241 311 - -
Vra3g0159 429 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Vra3g0159 429 MobiDBLite consensus disorder prediction 159 207 - -
Vra3g0159 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vra3g0159 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 - -
Vra3g0159 429 SMART ring_2 19 59 IPR001841 -
Vra3g0159 429 MobiDBLite consensus disorder prediction 297 311 - -
Vra3g0159 429 MobiDBLite consensus disorder prediction 112 147 - -
Vra3g0159 429 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0159 Vra-Chr3 1790680 1797469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0159 3 348 C3H Transcription Factor Family AT2G30580 55.043 1.38e-118 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0159 K16277 - gmx:100793731 735.332