Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0152 ATGGAGGTTGGCCTCAACAAGGAGAACATGGGCTTTGAGGAAACTGAGCTAAGGCTTGGACTCCCTGGAGGAAACGCTGCCTCACCCACTGAAGAACTTCTTAGGAAGAGAGGTTTCTCTCAGACTCAAACTCACCATGACACTGCCACTGTAGATTTGATGCTTAATCTTTCATCCAAGGAACCAACCACTGGATCAGATCCATCTCATAAACACAACTCCTTGCCTAAGGACAACACCCTTCTCCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAATATGTTAGCTGTGCAAAAGAGTATTGGAGAAGAGAGTGAGAAGAATAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTATCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCGCGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAACTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAAAGCAAGAACAGGAGCTAG 744 0.4704 MEVGLNKENMGFEETELRLGLPGGNAASPTEELLRKRGFSQTQTHHDTATVDLMLNLSSKEPTTGSDPSHKHNSLPKDNTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSIGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0152 247 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Vra3g0152 247 MobiDBLite consensus disorder prediction 55 95 - -
Vra3g0152 247 SUPERFAMILY CAD & PB1 domains 117 226 - -
Vra3g0152 247 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 238 - -
Vra3g0152 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 238 IPR003311 GO:0005634|GO:0006355
Vra3g0152 247 Pfam AUX/IAA family 14 234 IPR033389 -
Vra3g0152 247 Gene3D - 121 238 - -
Vra3g0152 247 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0152 Vra-Chr3 1730814 1733716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0152 120 230 B3 DNA Binding Superfamily AT3G61830 33.333 1.70e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra3g0152 AUX_IAA 1.5e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0152 K14484 - gmx:100810013 410.994