Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0151 ATGGGGAGCTATGAAACTGAACTGAATCTTAGGGCCACAGAGTTGAGGTTGGGATTGCCCGGGAGTGATGAACCTCAAGAGAAACGTCCGTGCAGTGGCTCTGTTGTCAGAAGCAGCAACAAGAGATCTTCACCAGAATTGGAAGAGTCCAGGTGCAAAAGCAACATTAACTCTGATTCTTCGGACTCCACAACCACAAGTGACCACAACGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGATGGCCACCGATTAGATCTTTTAGGAAGAACAGCCTACAACAGAAAAAGGTGGAGCAGGGCGATGGAACTGGAATGTACGTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCAGAACTCCTCAAGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATACTCAGAAAGGGAGGGATACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCGTATCCTCCTGTAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGCTTGTTTATGA 612 0.4624 MGSYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLACL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0151 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 201 IPR003311 GO:0005634|GO:0006355
Vra3g0151 203 PANTHER AUXIN-INDUCED PROTEIN 3 201 - -
Vra3g0151 203 Gene3D - 102 203 - -
Vra3g0151 203 MobiDBLite consensus disorder prediction 15 77 - -
Vra3g0151 203 SUPERFAMILY CAD & PB1 domains 103 191 - -
Vra3g0151 203 MobiDBLite consensus disorder prediction 56 74 - -
Vra3g0151 203 Pfam AUX/IAA family 13 201 IPR033389 -
Vra3g0151 203 ProSiteProfiles PB1 domain profile. 107 199 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0151 Vra-Chr3 1715850 1717186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0151 98 200 B3 DNA Binding Superfamily AT2G46530 36.893 2.61e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra3g0151 AUX_IAA 7.5e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0151 K14484 - gmx:100792134 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0151 3 1715850 1717186 Vra8g1071 8 24985013 24986638 PCT