Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0150 ATGGCGAATAACCCTTCCGACGCTCCCGCAGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGGAGACTCGGGCCTTGCTTCTGCCGATGTTGGACTCTCCGGTACTACTTCTCCGGCTCCGATGATGCTGCAGCTTAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGTGGAAAGCGCTATCGCGACGACGTGGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTACTACTATGCCTACTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGAGCAAGGAGAGGACAGGCTACAGATCCACATAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTCGTTCCCAGTGTCAATAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTCGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCGGGTGCAGTGGCACCACTGGTAACTGACATACCGTTATCATCAGTTGAGGAAGAAGGTGGTGAAGGTGCAAGAAACCGACCAGCATGGGACAAGTTGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTAGCATCGGCAATTTACCAGTCACAACCACCGGACTCTTCTAGTATAGTGAAGCCTGAAACTAATCCTCCTTCATAG 879 0.5154 MANNPSDAPADDFLEQILGLPTFASGDSGLASADVGLSGTTSPAPMMLQLNSADANAHLTGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRYRDDVVDGRAKNVFHGQPMPTTMPTAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKLSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0150 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vra3g0150 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Vra3g0150 292 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 281 - -
Vra3g0150 292 Gene3D - 131 193 IPR036638 GO:0046983
Vra3g0150 292 SMART finulus 142 191 IPR011598 GO:0046983
Vra3g0150 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Vra3g0150 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0150 Vra-Chr3 1701443 1705254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0150 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.000 3.90e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0150 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0150 - - gmx:100797789 509.605