Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0144 ATGATTCCGCAACACGGAACCAATAGTTATTCTTTGGTTCCTGATGTTGACAAGGTCAGGATTACCAGTATGGTCAAGGACAAAAACTTGTCAGCCTTTACAGAGTTTGGAGGAGTTGAAGGTGTTGCAAACATTCTTGGAACCATTCCAGAAAAGGGAATCACTGGCAGCCATGAAGATGTTGCCAAACGTATTCAAGTATTCGGTTCCAACACTTACCAGAGGCCACCGCCTAAGTTTTTCCTGAGCTTTGTAGTGGAAGCTTTCAATGACACTACTATTCTGATTCTTCTTGTTTGCGCCGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGTCCGGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTGTTTCTGGTGGTGGTTGTTACCGCACTCAGTAACATCAGACAAGAGAGACAGTTTGACAAATTGTCAAAGATAAGCAACGACATCAAAGTAGAAGTAGTGAGAAATGGAAGGCCACAGCGGATATCCATCTTTGATGTTGTAGTGGGAGATATTGCATCCCTTAAGATTGGTGATCAGATTCCAGCAGATGGATTGTTCTTGAGAGGCCATTCTTTGCTAGTGGATGAATCCAGTATGACAGGTGAGAGCGATCATGTAGAAATTGAGTCTTCAAGAAGCCCCTTCTTGTTGTCTGGTGCAAAAGTGGTGGATGGATATGCTCAGATGCTAGTGACATCTGTGGGAACCAACACGGCATGGGGTGAAATGATGAGCTCGATATCGCGAGACACCAACGAAAGGACACCATTACAGGCTCGCCTTGAGAAGTTAGCCTCTTCTGTTGGAAGGGTAGGCCTCAGAGTTGCTTTTATTGTTCTCAGAGTCTTGTTATTTCGTTATTTCACTGGAAACACACAAGATAATGAAGGGAAGACAGAGTTCCAGGGGAGTAAAACTGATGTAAGCGACATTTTCAATGCGGTTGTGAGGATTGTCGCTGCTGCAGTGACTATTGTGGTGGTGGCAATCCCTGTGGGTCTGCCGTTGGTCGTCACTCTCACTCTTGCTTACTCCATCAAAAGAATGATGGCAGACCGTGCAATGGTGAGGAAACTTTCTGCTTGCGAAACCATGGGATCGGCTACAGTTATTTGCACGGATAAAACTGGTACCTTAACCTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTGCAAAATGTCGCGGAAAATTTTTCCAATGCAATGGCCCCTAAAGTTCTTGAATTATTCCAACAAGGAGTTGGCCTCAACACAACTGGAAGTATCTATAAATCTTCATCAATATCTGAACCCGAAATTTCTGGCAGCCCAACTGAGAAAGCTATGCTCTTGTGGGCCGTGTCAGATTTAGGCATGGACATGGATGAACTGAANCGCACACACGAAGTTCTCCATGTTGAAANGTTTAACTCTGAAAAGAAACGAAGTGGCGTNGCAATAAGGAAGGAGACTAACAACACAGTTCACGTTCACTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCAAATTATATTGACAATAACGGCATAGAGAAGTCCCTTGATGAAGAGCGGAGCAAACTTGAAAATATAATTGAAGGCATGGCTGCTAGCAGCCTTAGATGTATTGCTTTTGCTCACAAGCAGATTTCAGAAGATATTGATTATAATGATAAGGAGAAAGCACACCAAATCCTTAGAAAAGATGGCTTGACCTTGCTAGGTATTGTTGGCCTCAAGGATCCATGCCGACCCGACGCCAAGGAGGCTGTGGAAATGTGTAAACGTGCAGGAGTTAGTGTGAAGATGATCACAGGTGATAACATATTCACTGCAAAAGCAATAGCAGCAGAATGCGGAATATTAGACTTTGATAGCGATGTGAGCGCGGGAGAGGTGGTGGAGGGTGTGGAATTCAGGAATTATTCTGAAGAAGAGAGAATGGAGAGAGTAGAGAAGATCCGCATAATGGCAAGATCATCCCCTTTCGACAAACTGTTGATGGTGCAGTGCTTGAAAAAGAAAGGTCACGTTGTTGCAGTCACGGGAGATGGCACAAATGACGCACCTGCTTTGAATGAAGCTGACATTGGACTTGCTATGGGGATCCAAGGAACTGAAGTTGCCAAGGAGAATTCTGACATTGTCATCTTAGATGACAACTTCAGTTCTGTTATGACTGTTTTAAGGTGGGGACGATGTGTTTACAACAACATCCAAAAGTTCATACAGTTTCAACTAACCGTGAATGTCACAGCTCTGGTGATCAATTTTATTGCAGCCGTTACTTCGAGAGATGTTCCCCTGACAACAGGTCAACTTTTATGGGTAAATCTGATAATGGGTACGCTAGGAGCATTGGCACTGGCAACAGAAAGACCTACAAAGGAGTTAATGGAGAAAAAGCCAGTGGGTAGGACTGAGCCTCTTATTACTAATATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAAATTTCTGTTCTCTTGGTTTTACAATTCAACGGAAAGTCAATCTTCAATGTTAGAGAGGAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTATTCAACGAGTTCAACTCTAGAAGTATGGAGAAACATAATGTATTCCGAGGGCTTCACAGAAACCATTTGTTTCTTGGAATTGTGGGAATTACAATTGTTCTTCAAGTTGTGATGGTGGAACTTTTAAGGAAGTTTGCTGATACAGAGAGACTAACATGGGAACAATGGGGAATTTGTATTGGAATTGCAGCTGTGTCATGGCCAATTGCTTGGATTACAAAGCTCATACCAGTTTCAGATAAACCCTTCAACCACGTTAAGTGTGTAAAATTATTGGTCTCCTAG 2883 0.4277 MIPQHGTNSYSLVPDVDKVRITSMVKDKNLSAFTEFGGVEGVANILGTIPEKGITGSHEDVAKRIQVFGSNTYQRPPPKFFLSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVTALSNIRQERQFDKLSKISNDIKVEVVRNGRPQRISIFDVVVGDIASLKIGDQIPADGLFLRGHSLLVDESSMTGESDHVEIESSRSPFLLSGAKVVDGYAQMLVTSVGTNTAWGEMMSSISRDTNERTPLQARLEKLASSVGRVGLRVAFIVLRVLLFRYFTGNTQDNEGKTEFQGSKTDVSDIFNAVVRIVAAAVTIVVVAIPVGLPLVVTLTLAYSIKRMMADRAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLQNVAENFSNAMAPKVLELFQQGVGLNTTGSIYKSSSISEPEISGSPTEKAMLLWAVSDLGMDMDELXRTHEVLHVEXFNSEKKRSGVAIRKETNNTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEERSKLENIIEGMAASSLRCIAFAHKQISEDIDYNDKEKAHQILRKDGLTLLGIVGLKDPCRPDAKEAVEMCKRAGVSVKMITGDNIFTAKAIAAECGILDFDSDVSAGEVVEGVEFRNYSEEERMERVEKIRIMARSSPFDKLLMVQCLKKKGHVVAVTGDGTNDAPALNEADIGLAMGIQGTEVAKENSDIVILDDNFSSVMTVLRWGRCVYNNIQKFIQFQLTVNVTALVINFIAAVTSRDVPLTTGQLLWVNLIMGTLGALALATERPTKELMEKKPVGRTEPLITNIMWRNLLAQALYQISVLLVLQFNGKSIFNVREEVKDTLIFNTFVLCQVFNEFNSRSMEKHNVFRGLHRNHLFLGIVGITIVLQVVMVELLRKFADTERLTWEQWGICIGIAAVSWPIAWITKLIPVSDKPFNHVKCVKLLVS* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0144 960 SUPERFAMILY HAD-like 378 791 IPR036412 -
Vra3g0144 960 Gene3D - 57 256 - -
Vra3g0144 960 Pfam E1-E2 ATPase 156 358 - -
Vra3g0144 960 Pfam haloacid dehalogenase-like hydrolase 378 701 - -
Vra3g0144 960 SFLD p-type atpase 362 740 IPR044492 -
Vra3g0144 960 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 17 944 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra3g0144 960 PANTHER CATION TRANSPORTING ATPASE 14 931 - -
Vra3g0144 960 PANTHER CALCIUM-TRANSPORTING ATPASE 14 931 - -
Vra3g0144 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 36 944 IPR023298 -
Vra3g0144 960 Gene3D - 377 732 IPR023214 -
Vra3g0144 960 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 657 767 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0144 960 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 321 407 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0144 960 Pfam Cation transporter/ATPase, N-terminus 37 104 IPR004014 -
Vra3g0144 960 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 584 IPR023299 GO:0000166
Vra3g0144 960 SMART Cation_ATPase_N_a_2 35 109 IPR004014 -
Vra3g0144 960 Gene3D - 390 587 IPR023299 GO:0000166
Vra3g0144 960 Gene3D - 87 942 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 580 591 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 602 612 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 687 706 - -
Vra3g0144 960 PRINTS P-type cation-transporting ATPase superfamily signature 711 723 - -
Vra3g0144 960 PRINTS H+-transporting ATPase (proton pump) signature 533 551 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0144 960 PRINTS H+-transporting ATPase (proton pump) signature 687 703 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0144 960 PRINTS H+-transporting ATPase (proton pump) signature 719 744 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0144 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Vra3g0144 960 Pfam Cation transporting ATPase, C-terminus 772 942 IPR006068 -
Vra3g0144 960 SFLD C1.7: P-type atpase like 362 740 - -
Vra3g0144 960 SUPERFAMILY Calcium ATPase, transduction domain A 156 254 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0144 Vra-Chr3 1638898 1642275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0144 11 949 Primary Pumps ATPases AT3G63380 70.000 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0144 K01537 - gmx:100790034 1625.14