Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0139 ATGAGTACCCAAAGTCTTAAATATGATGGCACCTCATTCCTCATTGACATAACCTCCACTGTTAATTACACCATCAACATAGCCAAAAAGAGATGGCGTTTTGCTTACACAGCAATTTATTCTAGGCGAGTCATGCTTGCCTTGGCCAAAGAAGTCATATCTAAGAGAAATACCAAAACCAGTCATTACTCTAACCTCTTCCAAACCCAATCTTCAAATTGCAGCAGTACTCTGGATATCATTGAGTCCCTGATTCCGCAACATGGGACCAATCATCATCCTTTGCTTCCTGATGTTGACAAGGTCAGGATTACCAGTATGGTCAAGGACAAAAACTTGTCATCCTTTACAGAGTTTGGAGGAGTTGAAGGTGTTGCAAACATTCTTGGAACCATTCCAGAAAAGGGAATCACTGGCAGCCATGAAGATGTTGCCAAACGTATTCAAGTATTCGGTTCCAACACTTACCAGAGGCCACCGCCTAAGTTTTTCCTGAGCTTTGTAGTGGAAGCTTTCAATGACACTACTATTCTGATTCTTCTTGTTTGCGCCGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGTCCGGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTGTTTCTGGTGGTGGTTGTTACCGCACTCAGTAACATCAGACAAGAGAGACAGTTTGACAAATTGTCAAAGATAAGCAACGACATCAAAGTAGAAGTAGTGAGAAATGGAAGGCCACAGCAGATATCCATCTTTGATGTTGTAGTGGGAGATATTGCATCCCTTAAGATTGGTGATCAGATTCCAGCAGATGGATTGTTCTTGAGTGGCCATTCTTTGCTAGTGGATGAATCCAGTATGACAGGAGAGAGCGATCATGTAGAAATTGAGTCTTCAAGAAGCCCCTTCTTGTTGTCTGGTGCAAAAGTGGTCGATGGATATGCTCAGATGCTAGTGACATCTGTGGGAACCAACACAGCATGGGGTGAAATGATGAGCTCGATATCGCGTGACACCAACGAAAGGACACCATTACAGGCTCGCCTTGACAAGTTAACCTCTTCTATTGGAAAGGTAGGCCTCACAGTCGCTTTTCTTGTTCTTGTAGTCTTGTTAATTCGTTATTTCACTGGAAACACACAAGATAAAAATGGGAACACAGAGTTCCAGGGGAGTAAAACTGATGTAAACGACATTTTCAATGCGGTTGTGAGGATTGTCGCTGCTGCAGTGACGATTGTGGTGGTGGCAATCCCAGAGGGTCTGCCATTGGCCGTCACTCTCACTCTTGCTTACTCCATGAAAAGAATGATGGCAGACCATGCAATGGTGAGGAAACTTTCTGCTTGCGAAACAATGGGATCGGCTACAGTTATTTGCACGGATAAAACTGGTACCTTAACCTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCAGCAAAATGTCGCGGAAAAATTTTCCAATGCAATGGCCCCTAAAGTTCTTGAATTATTCCAACAAGGAGTTGGCCTCAACACAACTGGAAGTATCTATAAATCTTCATCAATATCTGAACCCGAAATTTCTGGCAGCCCAACAGAGAAAGCTATACTCTTGTGGGCCGTGTCAGATTTAGGCATGGACATGGATGAACTGAANCGCACACACGAAGTTCTCCATGTTGAAANGTTTAACTCTGAAAAGAAACGAAGTGGCGTNGCAATAAGGAAGGAGACTAACAACACAGTTCACGTTCACTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCAAATTATATTGACAATAACGGCATAGAGAAGTCCCTTGATGAAGAACGGAGTAAACTTGAAAACATAATTGAAGGCATGGCTGCTAGCAGCCTTAGATGTATTGCTTTTGCTCACATGCAGATTTCAGAAGATATTGATTATAACGATAAGGAGAACGCACACCAAATCCTTAGAAAAGATGGCTTGACCTTGCTAGGTATTGTTGGCCTCAAGGATCCATGCCGACCCGACGTCAAGAAGGCTGTGGAAACCTGTAAACATGCAGGAGTTAGTATCAAGATGATCACAGGTGATAACATATTCACTGCAAGAGCAATAGCAACAGAATGCGGAATACTAGACTTTGATGGGCATGTGAGCGCGGGAGAAGTGGTGGAGGGTGTGGAATTCAGGAATTATTCTGAAGAAGAGAGAATGGAGAGAGTAGAGAAGATCCGCGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTGCAGTGCTTGAAAAAGAAAGGTCACGTTGTTGCAGTCACGGGAGATGGCACAAATGACGCACCTGCTTTGAAAGAAGCTGACATTGGACTTTCTATGGGGATCCAAGGAACTGAAGTTGCCAAGGAGAGTTCAGACATTGTGATCTTAGATGACAACTTCAGTTCTGTTGCCACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATCCAGTTTCAACTAACAGTGAATGTTGCAGCTCTAGTGATAAATTTTATCGCAGCAGTTTCTTCGGGAGATGTTCCCCTGACAACAGTTCAACTTTTATGGGTAAATCTGATAATGGATACGCTAGGAGCATTGGCACTGGCAACAGAAAGACCTACAAAGGAGTTAATGGAGAAAAAGCCAGTGGGTAGGACTGAGCCTCTTATTACTAGTATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAAATTTCTGTTCTCTTGGTTTTACAATTCAACGGAAAGTCAATCTTCAATGTTAGAGAGGAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTATTCAACGAGTTCAACTCAAGAAGTATGGAGAAACTTAATGTATTCCGAGGGCTTCACAGAAACCATTTGTTTCTTGGAATTGTGGGAATTACAATTGTTCTTCAAGTTGTGATGGTGGAACTTTTAAGGAAGTTTGCTGATACAGAGAGACTAACATGGGAACAATGGGGAATTTGTATTGGAATTGCAGCTGTGTCATGGCCAATTGCTTGGATTACAAAGCTCATACCAGTTTCAGATAAACCTTTCTTCAGCCACGTTAAGTGGGTAAATTTATCGGTCTTGAAGATTAAGCATTATTTATAA 3153 0.4212 MSTQSLKYDGTSFLIDITSTVNYTINIAKKRWRFAYTAIYSRRVMLALAKEVISKRNTKTSHYSNLFQTQSSNCSSTLDIIESLIPQHGTNHHPLLPDVDKVRITSMVKDKNLSSFTEFGGVEGVANILGTIPEKGITGSHEDVAKRIQVFGSNTYQRPPPKFFLSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVTALSNIRQERQFDKLSKISNDIKVEVVRNGRPQQISIFDVVVGDIASLKIGDQIPADGLFLSGHSLLVDESSMTGESDHVEIESSRSPFLLSGAKVVDGYAQMLVTSVGTNTAWGEMMSSISRDTNERTPLQARLDKLTSSIGKVGLTVAFLVLVVLLIRYFTGNTQDKNGNTEFQGSKTDVNDIFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGQQNVAEKFSNAMAPKVLELFQQGVGLNTTGSIYKSSSISEPEISGSPTEKAILLWAVSDLGMDMDELXRTHEVLHVEXFNSEKKRSGVAIRKETNNTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEERSKLENIIEGMAASSLRCIAFAHMQISEDIDYNDKENAHQILRKDGLTLLGIVGLKDPCRPDVKKAVETCKHAGVSIKMITGDNIFTARAIATECGILDFDGHVSAGEVVEGVEFRNYSEEERMERVEKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKKPVGRTEPLITSIMWRNLLAQALYQISVLLVLQFNGKSIFNVREEVKDTLIFNTFVLCQVFNEFNSRSMEKLNVFRGLHRNHLFLGIVGITIVLQVVMVELLRKFADTERLTWEQWGICIGIAAVSWPIAWITKLIPVSDKPFFSHVKWVNLSVLKIKHYL* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 286 300 - -
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 663 674 - -
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 685 695 - -
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 770 789 - -
Vra3g0139 1050 PRINTS P-type cation-transporting ATPase superfamily signature 794 806 - -
Vra3g0139 1050 Gene3D - 460 815 IPR023214 -
Vra3g0139 1050 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1027 IPR023298 -
Vra3g0139 1050 SFLD C1.7: P-type atpase like 445 823 - -
Vra3g0139 1050 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 101 1027 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra3g0139 1050 Pfam Cation transporting ATPase, C-terminus 855 1025 IPR006068 -
Vra3g0139 1050 SUPERFAMILY HAD-like 461 875 IPR036412 -
Vra3g0139 1050 SUPERFAMILY Calcium ATPase, transduction domain A 239 337 IPR008250 -
Vra3g0139 1050 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 470 667 IPR023299 GO:0000166
Vra3g0139 1050 Pfam E1-E2 ATPase 239 441 - -
Vra3g0139 1050 Gene3D - 473 670 IPR023299 GO:0000166
Vra3g0139 1050 Pfam haloacid dehalogenase-like hydrolase 461 784 - -
Vra3g0139 1050 Gene3D - 170 1025 - -
Vra3g0139 1050 ProSitePatterns E1-E2 ATPases phosphorylation site. 465 471 IPR018303 -
Vra3g0139 1050 Gene3D - 140 339 - -
Vra3g0139 1050 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 496 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0139 1050 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 740 850 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0139 1050 CDD P-type_ATPase_Ca_PMCA-like 144 903 - -
Vra3g0139 1050 PRINTS H+-transporting ATPase (proton pump) signature 616 634 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0139 1050 PRINTS H+-transporting ATPase (proton pump) signature 770 786 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0139 1050 PRINTS H+-transporting ATPase (proton pump) signature 802 827 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0139 1050 PANTHER CATION TRANSPORTING ATPASE 17 1014 - -
Vra3g0139 1050 Pfam Cation transporter/ATPase, N-terminus 120 187 IPR004014 -
Vra3g0139 1050 PANTHER CALCIUM-TRANSPORTING ATPASE 17 1014 - -
Vra3g0139 1050 SMART Cation_ATPase_N_a_2 118 192 IPR004014 -
Vra3g0139 1050 SFLD p-type atpase 445 823 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0139 Vra-Chr3 1594614 1599467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0139 28 1037 Primary Pumps ATPases AT3G63380 69.428 0.0 1364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0139 K01537 - gmx:100790034 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0139 3 1594614 1599467 Vra8g0457 8 6150116 6151261 PCT