Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0137 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAACTTCAGGAACTGGGAGGACTCACTCACGCTCTTTCTAACATTTCTCCTCAACAACAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCTACTAATAGATTTGTTTGCGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGAGGCCATAACCTCCCCTGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCCAGGGCCCTTGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGCGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGTGGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCATATGACCAGCTTCAACCAATGGGACTCGTCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTTCCCTCCAAATCAAGCCAGAATCTCAAACTTTCCACAACCCCACTCTCTCTTCACTTCTCCAACACCAAGAGCAGCCACATCCCAACAAGGGCATGATAACCTCACCCTTCGGGAACCTCCACGTGCCCTCACAAGCCTCCAGCGCTACCACGTCAGCATACATGTCAGCCACTGCGTTGCTTCAAAAGGCTGCATCCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCAGACCGCAATGGGTCACGTGACTCAGCTCGGAACAGCGAGCCAACTCGACCCTCTGGTGGTGCCGGATAGCTACATAAGAGGATTCCCCGGTCGTAGCCTCAAGAATGACCGTCTCACTAGGGACTTCCTCGGACTCACGGCAGAAGTTAACGGCGGAGTTGACGGCGCCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCAGGGGGTGTAGAGTACCACCAACCGCTCCGTCAGCATCACCACCACGCGCTTCTCAAGCCCCAACAAGCTTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1374 0.5066 MFPTAISNSTSLSEDASVSSGTKLQELGGLTHALSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNIATSLQIKPESQTFHNPTLSSLLQHQEQPHPNKGMITSPFGNLHVPSQASSATTSAYMSATALLQKAASVGAAAMTGPGPAAVGPQTAMGHVTQLGTASQLDPLVVPDSYIRGFPGRSLKNDRLTRDFLGLTAEVNGGVDGAAVDVSTNVKDMLTFAGGVEYHQPLRQHHHHALLKPQQAFGFLETTTAPETWGNC* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0137 457 MobiDBLite consensus disorder prediction 35 59 - -
Vra3g0137 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 435 - -
Vra3g0137 457 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g0137 457 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vra3g0137 457 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Vra3g0137 457 Gene3D Classic Zinc Finger 55 124 - -
Vra3g0137 457 Gene3D Classic Zinc Finger 145 210 - -
Vra3g0137 457 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 435 - -
Vra3g0137 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Vra3g0137 457 SMART c2h2final6 76 98 IPR013087 -
Vra3g0137 457 SMART c2h2final6 117 147 IPR013087 -
Vra3g0137 457 SMART c2h2final6 152 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0137 Vra-Chr3 1564428 1568600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0137 15 444 IDZ Gene Family AT4G02670 50.222 9.72e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0137 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0137 K25870 - gmx:100788975 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0137 3 1564428 1568600 Vra8g1101 8 25612162 25616490 PCT
Vra8g1500 8 31927688 31931563 Vra3g0137 3 1564428 1568600 PCT