Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0136 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTTGAATCGTCACCACCATCCTCCTCATCGTCGCCAAAGTCTCAAACGGGAGGTGATGAGTCAGCAATGGTTTTTCTTCCAAGGCCAATGGAGGGGCTTCACGAAATAGGGCCACCTCCATTTCTGACCAAGACCTATGATGCCGTGGAGGACCCTACCACTAGCCACATAGTTTCATGGAGCAGAGGTGGTGCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCATAACAATTTCTCCAGCTTTGTAAGGCAACTAAACACTTACGGTTTTAGAAAGATTGATCCCGATAGGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGACACAGGCACCTTTTGGCAAACATAAGGAGAAGAAAGCAACATTCTCAGCCTTCCACTTCTCAACAAGGACAAGGGCACTGTGTTGAAGTTGGTCGTTTTGGACTTGATGAAGAGGTTGATCGTTTAAAGCGTGACAAGCAGGTGCTGATGATGGAGCTTGTGAAGCTGAGACAGCAGCAGCAGAATACGAGGTCGTACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAGCAGATGATGTCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCAATGTCGAAGAAGAGGAGAAGACCAATCGAGCAAGGAGCAAGTGGGGTTGGAGAATCAAGCATTGGAAGGGAAGGAAGAAACAGCGTTAAAGTGGAGTGCCAAGTGTTTGGGGAATATGGATTTGGAGTCTCAGAGTTGGAAGTGTTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAGAGGGAACAAGAGGAAGAGCCTGAGGCACTAGAATCACAGGAGAGGTTGGAGAAAGAACTTGATGAAGGTTTCTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCACAAGACCCAGATGAAGAAGAAGATGTCAATGTGTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAAATGA 1113 0.4699 MNYLYPVKEEYFESSPPSSSSSPKSQTGGDESAMVFLPRPMEGLHEIGPPPFLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQHSQPSTSQQGQGHCVEVGRFGLDEEVDRLKRDKQVLMMELVKLRQQQQNTRSYLEEMEERLRGTEIKQQQMMSFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGASGVGESSIGREGRNSVKVECQVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDPDEEEDVNVLANRFGYLGSSPK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0136 370 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0136 370 MobiDBLite consensus disorder prediction 244 267 - -
Vra3g0136 370 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0136 370 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0136 370 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0136 370 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Vra3g0136 370 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0136 370 Coils Coil 169 203 - -
Vra3g0136 370 Coils Coil 231 251 - -
Vra3g0136 370 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 358 - -
Vra3g0136 370 MobiDBLite consensus disorder prediction 1 32 - -
Vra3g0136 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 358 IPR027725 -
Vra3g0136 370 MobiDBLite consensus disorder prediction 13 29 - -
Vra3g0136 370 Gene3D - 45 142 IPR036388 -
Vra3g0136 370 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0136 Vra-Chr3 1545282 1547862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0136 38 368 HSF AT3G22830 55.191 5.07e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra3g0136 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0136 K09419 - gmx:100794264 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0136 3 1545282 1547862 Vra8g1102 8 25643796 25646217 PCT