Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0132 ATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCGTGGGTCGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAAGGGTGTCAACTTTTCTGAAGAGAAACTTTGCAAGTGGCTTGTTCAATTGCTGATGGCTCTTGATTACTTGCATGGAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCGGTCGTTGGGACACCAAGTTATATGTGCCCAGAGCTTCTTGCTGACATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTGAGAATGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTGAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAAGGACAGGGAACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAACTATCCGTGGGTTGTGTAGGTAACAAATACAATCCTGATACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGCTTCTGCCACTGCCAAAAGGCAAACAATTGCACCATCAAAGACAACCTATACTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGGGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCAATGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTGCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCCAGTCCAAAGGCAACTCAATGCCCTTCCGAGCATGTAAAAGCTTGTGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCAGGTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTTGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGAGAAACAGCAATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1806 0.4352 MEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKAKGVNFSEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALENDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIEKIHLKLNSPRRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKCLSFSKDRELNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPDTKFSTVERTPRLRAVTASATAKRQTIAPSKTTYTGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPMAYSEDPFFPVRGPSSTSARCSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPSPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0132 601 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0132 601 MobiDBLite consensus disorder prediction 382 400 - -
Vra3g0132 601 PANTHER SERINE/THREONINE-KINASE NEK4 1 590 - -
Vra3g0132 601 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra3g0132 601 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 590 - -
Vra3g0132 601 Gene3D Transferase(Phosphotransferase) domain 1 86 315 - -
Vra3g0132 601 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0132 601 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vra3g0132 601 Pfam Protein kinase domain 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0132 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vra3g0132 601 CDD STKc_Nek 3 260 - -
Vra3g0132 601 SUPERFAMILY Protein kinase-like (PK-like) 1 321 IPR011009 -
Vra3g0132 601 MobiDBLite consensus disorder prediction 382 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0132 Vra-Chr3 1494263 1502269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0132 10 261 MAP Kinase Kinase Kinase AT1G53570 30.859 4.26e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra3g0132 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0132 K08857 - gmx:100805201 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0132 3 1494263 1502269 Vra3g0132 3 1494263 1502269 ECH
Vra3g0132 3 1494263 1502269 Vra8g1111 8 25774504 25780690 PCT