Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0131 ATGGGTAACGCAGACTATGCAAACCCAGTGGCTATTCCACCCCCTCAATCATTCTTCAAGTCTCTCAAGTACTCCTTGAAAGAGACCTTTTTCCCAGATGACCCCTTTAGGAAGTTCAAGAACCAAACACCCTCTGTCAAGTTCGTCCTCGGACTTCAGTACTTCTTCCCCATCTTTGAATGGGCACCCAAATACACCCTCCAGTTCTTGAAATCAGACCTCATATCTGGCATCACCATTGCCAGTTTGGCCATTCCTCAAGGCATCAGCTACGCCAAGCTCGCCAACCTCCCTCCGATTCTTGGACTTTATTCGAGCTTCATACCCCCACTGATTTATGCTATGATGGGAAGCTCAAGGGATTTGGCAGTGGGAACTGTGGCGGTTGGATCACTTCTGATGGCTTCTATGTTGGGTCGAGTGGTGAACTACATCGAGAATCCAAACCTTTATCTCCATCTAGCTTTCACTGCTACATTCTTTGCTGGAGTTTTGCAGGCATCACTGGGCTTATTCAGGTTAGGGTTTATCGTGGATTTTCTGTCACATGCAACCATAGTAGGGTTCATGGGGGGAGCAGCCACAGTGGTTTGTCTGCAACAGCTAAAATCTATTCTTGGCCTTGAACATTTTACTCACGAGGCTGATATAGTGTCAGTGATGCGCTCTGTTTTCAGCCAAACTCACCAGTGGAGGTGGGAAAGCGCTGTGTTGGGTTGTTGCTTTATTTTCTTTCTCCTTGTCACAAGATACTTCAGCAAACGACAACCAAAGTTCTTCTGGGTGTCAGCAATGGCACCATTGGCATCGGTCATACTCGGAAGTCTGCTGGTTTATCTCACACACGCTGAGAAACATGGAGTTCAAGTGATAGGAAAATTGAAGAAGGGGCTGAATCCACCTTCCGTGACGAATTTGGTATTGGTGTCACCTTACATGGGAACTGCCATAAAAACTGGACTTGTCACTGGCATTATAGCACTTGCGGAAGGAATAGCAGTGGGTAGAAGTTTTGCAATGTTTAAAAATTATCATATTGATGGGAACAAAGAGATGATAGCTATTGGAACCATGAATATTTTTGGTTCGTTTACCTCTTGCTATCTCACCACAGGACCTTTTTCACGTTCAGCTGTGAACTATAATGCGGGGTGCAAGACTGCCGCTTCAAACATTGTGATGGCTATAGCAGTGATGTTAACATTGTTATTCTTGACACCCTTGTTCCATTTCACTCCCCTGGTGGTGTTATCAGCCATAATTGTGTCAGCAATGCTCGGGCTCATTGATTATGAAGCAGCCATTCATTTGTGGAAAATCGACAAATTTGATTTCTTTGTGTGCTTCGGTGCTTATGTTGGTGTAGTCTTTGGCAGTGTTGAAATTGGCCTAGTCATAGCAGTTGCTGTATCTCTACTTCGAGTACTTCTATTCATTGCAAGGCCAAGAACATTTCTCTTAGGCAACATTCCAAATTCTACAGTATACAGAAACGTGGAACAATATCCAAATGCAAATCATGTTCCTGGAATCCTAATTCTAGAAATTGATGCTCCCATTTACTTTGCCAATGCAAGCTATTTACGAGAAAGGATCACAAGGTGGATAGATGAAGAGGAAGATAGGATAAAAGCTTCAGACCAAACCACTTTACAGTATGTTATAATTGATATGACTGCTGTTGGAAACATTGATACTAGCGGAATAAGCATGCTTGAAGAGTGCAAGAAAACTGCTGACAGAAGAGGGTTGCAACTTGTTTTGGTAAATCCTGGAAGCGAGGTGATGAAGAAGCTGAACAAATCAAAGTTCCTTGATGAACTAGGGCATAAATGGGTGTATCTGACAGTTGAAGAGGCTGTTGGTGCATGCAATTTCATGCTCAACTCATACAAACCGAACCCCATGAAGGATGATTCAGAAGGTTGGAACAATGCCTGA 1941 0.4353 MGNADYANPVAIPPPQSFFKSLKYSLKETFFPDDPFRKFKNQTPSVKFVLGLQYFFPIFEWAPKYTLQFLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMASMLGRVVNYIENPNLYLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKSILGLEHFTHEADIVSVMRSVFSQTHQWRWESAVLGCCFIFFLLVTRYFSKRQPKFFWVSAMAPLASVILGSLLVYLTHAEKHGVQVIGKLKKGLNPPSVTNLVLVSPYMGTAIKTGLVTGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIFGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMAIAVMLTLLFLTPLFHFTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFFVCFGAYVGVVFGSVEIGLVIAVAVSLLRVLLFIARPRTFLLGNIPNSTVYRNVEQYPNANHVPGILILEIDAPIYFANASYLRERITRWIDEEEDRIKASDQTTLQYVIIDMTAVGNIDTSGISMLEECKKTADRRGLQLVLVNPGSEVMKKLNKSKFLDELGHKWVYLTVEEAVGACNFMLNSYKPNPMKDDSEGWNNA* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0131 646 CDD STAS_SulP_like_sulfate_transporter 502 617 - -
Vra3g0131 646 ProSitePatterns SLC26A transporters signature. 99 120 IPR018045 GO:0008271|GO:0008272
Vra3g0131 646 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 644 - -
Vra3g0131 646 Pfam STAS domain 502 620 IPR002645 -
Vra3g0131 646 ProSiteProfiles STAS domain profile. 501 624 IPR002645 -
Vra3g0131 646 SUPERFAMILY SpoIIaa-like 503 624 IPR036513 -
Vra3g0131 646 Pfam Sulfate permease family 70 449 IPR011547 GO:0016021
Vra3g0131 646 TIGRFAM sulP: sulfate permease 57 620 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra3g0131 646 Gene3D STAS domain 481 626 IPR036513 -
Vra3g0131 646 PANTHER SULFATE TRANSPORTER 2 644 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0131 Vra-Chr3 1470482 1477482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0131 3 634 Inorganic Solute Cotransporters AT4G02700 67.930 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0131 K17471 - gmx:100791091 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0131 3 1470482 1477482 Vra3g0131 3 1470482 1477482 ECH
Vra3g0131 3 1470482 1477482 Vra8g1113 8 25827680 25833439 PCT