Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0119 ATGATGCCAAACATGCCGCGAACTGGAGAAAGAAGAAGAAGAAAAAGATACAACCTTAGCCGCTTGAACTTGAACCTATGTTTCTCAATTCCCATGCAATCGTTCACACCACAATCTTCCCCTACCGCCACCTCTTCAACCCTTCTTCACAATCAAAACAAAACACCTCTATCACAAACCGCCACGTCACCGTCCCCGATCAACAACTTCAACTACGACCCTACTAACCCATTCCCGAACCTCGGACCCGAACCCCAACCTGCTGACCTGGCCTCCGCTTTCGTCTCCCACCGCTTCTTCTTCACCTACCCCGGCCGCTCCAACTCCATCGTCGAATCCACCATCACCGACACCGATTTCGCCACCTCCTCGTCCTCGCTGGGAAATCCAGTCGCCACCGTTGACGAAAAGGCAAAAACGGCGCTCGAAGGCAGCGTTGCGGTGGAGATGTACTCGCTGGACCCCTACGCGGATTTCCGGCGCTCCATGGAGGAGATGGTGGCGGCGAGTCCCGAGTTGATCGACGTGGCGGCTAATTGGAAAGAGCTTCTTTTCTGCTACCTCGCGCTCAACCCGAAGAGCACGCACAAGTTCATCCTCTGCGCTTTTTCTGATCTTCTTCTAAGCCTCATCTCGCACTCTTCTCCTCCGCCGCAGGATGAAGGTGCCGGCGATGGATGTTCGAATTCGATACAGTAA 699 0.5408 MMPNMPRTGERRRRKRYNLSRLNLNLCFSIPMQSFTPQSSPTATSSTLLHNQNKTPLSQTATSPSPINNFNYDPTNPFPNLGPEPQPADLASAFVSHRFFFTYPGRSNSIVESTITDTDFATSSSSLGNPVATVDEKAKTALEGSVAVEMYSLDPYADFRRSMEEMVAASPELIDVAANWKELLFCYLALNPKSTHKFILCAFSDLLLSLISHSSPPPQDEGAGDGCSNSIQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0119 232 Pfam Transcriptional repressor, ovate 152 210 IPR006458 -
Vra3g0119 232 ProSiteProfiles OVATE domain profile. 148 209 IPR006458 -
Vra3g0119 232 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 23 216 IPR038933 GO:0045892
Vra3g0119 232 MobiDBLite consensus disorder prediction 38 66 - -
Vra3g0119 232 PANTHER TRANSCRIPTION REPRESSOR OFP12 23 216 - -
Vra3g0119 232 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 146 211 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0119 Vra-Chr3 1362085 1364645 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra3g0119 Ovate 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0119 - - pvu:PHAVU_001G153000g 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0119 3 1362085 1364645 Vra8g1126 8 26058000 26060210 PCT