Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0098 ATGGCTGCACCGCCAAATAGCAGGCTTCAAACCATGTTAAGGAGCGCAGTGCAATCAGTTCAATGGACTTACAGCCTCTTCTGGCAACTTTGTCCCCAACAAGGGATTTTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACGAGGAAGACGGTTCAAGCAATGGAAGTGAGCACTGAGGAAGCTTCTCTGCAAAGAAGCGAGCAACTTCGAGAGTTATATGAATCTTTGTCTGCTGGAGAAGCGAACTCGCAAACACGAAGACCATGTGCTGCTTTGTCTCCTGAAGATCTAACGGAATCAGAATGGTTCTATCTCTTGTGTGTCTCTTTCTCCTTTCATCCTGGTCTCGGGTTGCCGGGAACAGCATATGCCAGGAGGCAGCATATATGGCTAACTGGTGCAAACGAAGTAGAGAGCAAAGCATTTTCCAGAGCTATTCTTGCCAAGAGTGCTAATATTCAGACAGTGGTGTGCATTCCTGTGTTGGATGGCGTGGTTGAGCTGGGCACAACCGACAAGATGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGATCAGCACCCTCCGACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACATCTTCTTCATACCCACTTGTCGTCACTGCCACTACTGCACCACCCAACCAAAACGACATCAACGTCGTTCACAAAGGAAAACAAGTTAAGTTGAATTCTGAACCAGGATTAACAGTTCGTAACAACAGTTTCATACCCACCGAACTAATGGAGCTGGACACGTTGGAGGGGTTTCGGGTCGGGTCACCCGGAGATGGATCCAACCACTTGGATTCCTTCCCCACAGAGGCTTCCATGGCACTGTGTTCTGCAGGGTTGGAACTTCTTCAACTTCAACTACCACCACAACCTCCAGAACAGCCTCCCTCAGAAAACAAAGCACAAGGCGACACAGACACTCACTACTCTCAGACAGTGTCCAGCATCCTCCAGAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCAGCGACGAGTACCGCGGGCAGCTCCAGATGACGGTGGCAGACGTAACATCGCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTTCCTTACCTGCACGCGAACCGGGTAAAGGGGAAGGGCGCCCCGTCATACGAGACAAGCCATGTGATGGCGGAGCGGCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTGATATTGCGTTCAATGGTACCTTTTGTAACGAGAATGGACAAGGCATCGATTCTGGGAGACACCATCGAATACATAAAACAGCTGAGGGAGAAGATTGAGAGTCTGGAGGCACGTGAGCGGCACGTGGGGAAGAGGAGGATGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGATGCACTATTGGAGTTGGAGTGTGTACATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGATTGAAGTGATGATGGTGCAATCCTGGGTTAGGGATGATGGAATCTTTGTCGCAGAGATGAGGGCCAAAGTCAAGGAAAATGGGAACGGGGAAATGGCTAGTATTCTGGAAGTCAAGAATGCCCTAAACCAGATTATACCCCGTCATATACCCCACCATGACCCATACACACTCCCTTCCAATGATCATTTTTAA 1731 0.4968 MAAPPNSRLQTMLRSAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANSQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGLGLPGTAYARRQHIWLTGANEVESKAFSRAILAKSANIQTVVCIPVLDGVVELGTTDKMEEDLNFIQHIKSFFIDQHPPTAKPALSEHSTSNPTSSSYPLVVTATTAPPNQNDINVVHKGKQVKLNSEPGLTVRNNSFIPTELMELDTLEGFRVGSPGDGSNHLDSFPTEASMALCSAGLELLQLQLPPQPPEQPPSENKAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGSDEYRGQLQMTVADVTSQWLLKYILFSVPYLHANRVKGKGAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEARERHVGKRRMREVEVSIIESDALLELECVHREGLLLDVMTLLRELGIEVMMVQSWVRDDGIFVAEMRAKVKENGNGEMASILEVKNALNQIIPRHIPHHDPYTLPSNDHF* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0098 576 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 408 457 IPR011598 GO:0046983
Vra3g0098 576 PANTHER TRANSCRIPTION FACTOR TT8 8 559 - -
Vra3g0098 576 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 409 471 IPR036638 GO:0046983
Vra3g0098 576 MobiDBLite consensus disorder prediction 304 327 - -
Vra3g0098 576 Gene3D - 403 473 IPR036638 GO:0046983
Vra3g0098 576 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Vra3g0098 576 SMART finulus 414 463 IPR011598 GO:0046983
Vra3g0098 576 Pfam Helix-loop-helix DNA-binding domain 411 458 IPR011598 GO:0046983
Vra3g0098 576 Coils Coil 447 474 - -
Vra3g0098 576 PANTHER TRANSCRIPTION FACTOR TT8 8 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0098 Vra-Chr3 1043377 1051350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0098 327 558 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.303 9.93e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0098 bHLH-MYC_N 3.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0098 - - gmx:100780422 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0098 3 1043377 1051350 Vra3g0098 3 1043377 1051350 ECH